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https://mp.weixin.qq.com/s/GZAoS1ACW6IsN8kuAVZzew
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**Describe the problem concisely**.
Determining abundance of cell types (or expression of NMF programmes, etc) across spatial locations by integrating single cell or single nucleus RNA-seq and spatia…
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Dear Authors,
Thank you for making such a wonderful tools.
I was wondering if I can use Bulk RNA-seq data as a reference to deconvolute a 10x Visium slide using your tools. I am thinking of usin…
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Hi,
I'm new to bulk2space, and I only have bulk RNAseq data from mouse brain which was made by our lab. I want to convert bulk transcriptomes into spatially resolved single-cell expression profile.…
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https://mp.weixin.qq.com/s/tJVbUy822mHxSnjO31jnLg
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Hello all
I have only **_scRNA-seq 10x PBMCs_** of cancer free and controls.
My boss has asked me
T cell analysis – differences between samples (scRNAseq)
Can we identify a/b or g/d pairs f…
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https://mp.weixin.qq.com/s/3dZQxDdY6M1WwMMcus5Gkg
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Hello,
I was wondering if this could potentially be used for scATAC-seq reference peaks to deconvolute bulk ATAC-seq expression?
Specifically I was wondering the constraints on the input matrix fo…
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https://bioconductor.org/packages/release/bioc/html/SPOTlight.html
* Likely drop rare snRNA-seq cell types
* Can start exploring how to run it by using the Tran et al, Neuron, 2021 data
* Create …
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https://mp.weixin.qq.com/s/RwZBIhjnBVry4BWZL8x1Zg