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I noticed the use of the `error()` command here and in another line of this script.
I ran into a condition where this part of the code was called and got:
```
could not find function "error"
```…
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```
Traceback (most recent call last):
File "/n/projects/mec/local/anaconda/envs/ucsc-cell-browser/bin/cbImportSeurat", line 6, in
from cellbrowser.seurat import cbImportSeurat2Cli
ImportEr…
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Following https://cellbrowser.readthedocs.io/scanpy.html example using latest pip install of both scanpy and cellbrowser gives an error in the scanpy pipeline process.
When running
`cbScanpy -e…
inodb updated
2 years ago
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This has stopped working between 0.5.x and 1.0.0. I had added this feature in #118 but it seems to have been reverted. Can we please re-instate the functionality? It is relevant for our Single Cell Ex…
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I'd previously installed 0.5.49, and when trying to upgrade, I got this:
```
cbUpgrade --code -o /var/www/html/demo/cellbrowser
INFO:root:dataRoot is not set in ~/.cellbrowser.conf. Dataset hiera…
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Hi Max,
In the following code featured for loading Seurat objects (https://cellbrowser.readthedocs.io/en/master/load.html):
```
require(Seurat)
require(data.table)
setwd("adultPancreas")
m…
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Hi there,
Looks like this issue has been encountered before (RunPCA error #1788), but doesn't look like there was a definitive solution. Also, the datasets associated with the issue were not provided…
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Hi! Tried to run cbImportSeurat and got this error:
Object was created with Seurat version 4.0.0
Error in ExportToCellbrowser :
can only process Seurat2 or Seurat3 objects, version of rds is 4.…
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Hi,
First of all thanks for building this tool, it's really awesome and helpful.
I was wondering if there's a way for changing the labels that are shown in the layout. It seems like by default, …
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Hi, I am trying to set up my own sc-ATAC-seq browser from `https://cells.ucsc.edu/?ds=cortex-atac+peaks` and I have a few questions.
1. When I build an html webpage, the program was interrupted and r…