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I just noticed this, but I've run summarizeFasta by itself on fastas of a variety of different sizes and it seems like taking ~40 minutes to run is the standard.
```
split/CPCG0269/CPCG0269_split4…
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[circRNA_finder](https://github.com/orzechoj/circRNA_finder) has 2 steps (perl scripts):
* `./runStar.pl`: align with STAR
* `./postProcessStarAlignment.pl`: process STAR output folder to generate…
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### Description of the bug
When selecting the web based launch method, I get the following error:
ERROR nf-core website API results response not recognised: https://nf-co.re/launch
See…
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== 11:48:56-Jan-11-2021 == [itst_intergenic] bedtools intersect -v -a output_chr1_control/isocirc.bed.exon.gtf -b /Drive4/nanopore_2nd_experiment/isocirc_nanopore/output_chr1_control/Homo_sapiens.GRCh…
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```
[ 2023-04-30 04:35:14 ] 97000 transcripts processed.
[ 2023-04-30 04:36:41 ] Exception raised from ENST00000553929.5
An error has occured during the function execution
…
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Hello,
I faced this kind of problem:
```
== 16:16:34-Apr-14-2021 == [gtf2gene] gtf2gene nanopore_circ/isocirc.bed.exon.gtf AT.gtf nanopore_circ/isocirc.bed.ovlp.gene.out
Traceback (most recent…
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Dear Dr. Christina Huan Shi,
Hi. Thank you for the great pipeline and detailed manuals.
I’ ve successfully run the pipeline. But I have several questions.
First, here was a WARNING after loa…
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Hi @Aufiero,
Thank you for creating and sharing such a great tool with the scientific community! I am currently using it to extract BSJ sequences for specific circRNAs. However, I am stuck at Modu…
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I’m using the isoCirc from your lab, it worked on your test data. But when I download your data from ebi (https://www.ebi.ac.uk/ena/browser/view/PRJNA594380?show=reads) and using isoCirc by the follow…
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```
Command executed:
set -euo pipefail
NXF_WORK=$(pwd)/work \
nextflow run /hot/users/yiyangliu/project-MissingPeptides-Method/pipelines/pipeline-meta-call-NonCanonicalPeptide/modules…