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and if not, port `cogent.draw.dendogram` to skbio
@ebolyen, would you want to work on this one?
Note there are examples of how to use the scipy version in the [MSA chapter of IAB](http://nbviewer.i…
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Hello All,
I am receiving following error while running the Family finding step of Cogent for a large dataset. Kindly suggest.
_input file:_
isoseq_flnc.fasta
_command:_
python /path/to/cDNA…
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No guessing in variant types. For more details see discussions below. Symptom: left-over constraints with an `Exhaustive` constraint. We might want to enhance it in some future.
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@ebolyen wrote this for @gregcaporaso's SciPy 2014's talk. [ipynb here](https://github.com/biocore/scikit-bio/blob/master/ipynbs/presentations/2014.07.09-gregcaporaso/caporaso-scipy2014.ipynb).
@ebo…
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### Session description
This is an interactive session to understand how to mitigate a [number of specific threats](https://lists.w3.org/Archives/Public/public-review-comments/2024Sep/0017.html) iden…
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Hi!
Running Cogent on isoseq3 data, after collapsing and filtering for 5' degraded isoform and reconstruction I have aligned the reconstructed gene and the different hq_isoforms. I do not understan…
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Forwarding feedback regarding Kannada
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Main obsevation of new version is,
ದ that there is improvement but still there are many problems with kan.traineddata file.
…
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## Are you using Knative Eventing Kafka?
If you are using Knative Eventing Kafka, we would love to know!
## Why?
Tracking usage in Open Source Software is hard, we have thousands of downloads…
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related to #19 (see [comment](https://github.com/biocore/brokit/pull/19#issuecomment-40743175) from @josenavas)
- usearch (but we can't install that)
- clustalw (1.83, which is what cogent wraps, is a…