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Hello, trans interaction analysis should use the following model.
python3 -m tensorqtl ${plink_prefix_path} ${expression_bed} ${prefix}
--covariates ${covariates_file}
--interaction ${interactions_…
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Hello TensorQTL team,
I am encountering an error while computing q-values using TensorQTL version 1.0.9 for cis-QTL. I have seen similar issues reported, and the recommendation was to use the lates…
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We should adapt this function from the matching file and make it a feature of MedRecord instead.
What is needed?
- Nodes into arrays that contain the values of their attributes so that we can trai…
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Dear @zhangyuqing , creator of ComBat-seq,
for experimental reasons, I was trying to run ComBat-seq on only two batches of the GFRN dataset you provided. I cropped the matrix accordingly (99 % sure…
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Hi Alexander,
I have installed the CRAN and development versions of `srm` to try adding exogenous person-level covariates of actor/partner effects. I have tried this with a couple of the example d…
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有时没有生成create_final_covariates.parquet。代码中需要兼容一下：
main-cn.py 将
```
covariate_df = pd.read_parquet(f"{INPUT_DIR}/{COVARIATE_TABLE}.parquet")
claims = read_indexer_covariates(covariate_df)
```
改为
…
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Hi,
When running test_diff the order of factors/covariates in the design matrix affects the final analysis.
I have put this issue up on BioStars: https://www.biostars.org/p/9588610/#9602501 and …
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There is no relationship between the standardized covariates and the adult abundance or catch. @ThanHitt - do you have the scripts used to make the covariates in `Data_SeasonalClimateStd.RData` includ…
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Covariates need to be updated when the model structure is changed. If the user put a covariate on CL and then changes the model to Michaelis Menten elimination there is no CL parameter anymore and the…