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mildpiggy
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DEP2
An r package for proteomics data Analysis, developed from DEP.
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DEP2 Set the groups order
#22
wuxiangjia
opened
3 days ago
5
`filter_se` parameter `fraction` can be misleading.
#21
m-pauper
closed
1 month ago
2
The order of factors/covariates in the design matrix of test_diff affects the final analysis
#20
AlannaGSpiteri
opened
2 months ago
2
Tested contrasts: M_vs_C Error in .ebayes(fit = fit, proportion = proportion, stdev.coef.lim = stdev.coef.lim, : No finite residual standard deviations
#19
AlannaGSpiteri
closed
1 month ago
0
test_diff function scrambles rownames
#18
adhutz
closed
1 month ago
1
merging ```SummarizedExperiment``` objects
#17
cathalgking
opened
3 months ago
6
filter_se function
#16
fedeserral
opened
3 months ago
1
Continuous covariates?
#15
m-pauper
opened
4 months ago
1
DEP2 Shiny Heatmap Error on Mac
#14
EEnim
opened
4 months ago
1
DEP2::plot_pca() only plots a maximum of 6 replicates
#13
1Moe
closed
2 months ago
1
len_limit not found
#12
offbrandcereal1
closed
2 months ago
1
hypothesis testing error - ```contrasts can be applied only to factors with 2 or more levels```
#11
cathalgking
closed
5 months ago
6
reduce font size for heatmap
#10
cathalgking
closed
3 months ago
1
check_enrichment_depends() error！
#9
lwlive
closed
5 months ago
2
Setting up a paired analysis
#8
luizalmeida93
opened
6 months ago
1
```impute()``` with zero values
#7
cathalgking
closed
6 months ago
3
Imputation is not reproducible, irrespective of set.seed()
#6
1Moe
closed
5 months ago
1
Get significant protein using pvalue instead p.adj
#5
enriiquee
closed
6 months ago
1
Using DEP2 without meta-data
#4
cathalgking
closed
5 months ago
12
Missing values lead to mis-labelling of points in DEP2::plot_volcano()
#3
1Moe
closed
7 months ago
3
Error in get_signicant
#2
gremame
closed
7 months ago
2
Master
#1
mildpiggy
closed
1 year ago
0