mildpiggy DEP2 issues - Githubissues

mildpiggy / DEP2

An r package for proteomics data Analysis, developed from DEP.

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The order of factors/covariates in the design matrix of test_diff affects the final analysis

#20 AlannaGSpiteri opened 2 weeks ago
2
Tested contrasts: M_vs_C Error in .ebayes(fit = fit, proportion = proportion, stdev.coef.lim = stdev.coef.lim, : No finite residual standard deviations

#19 AlannaGSpiteri closed 3 days ago
0
test_diff function scrambles rownames

#18 adhutz opened 1 month ago
1
merging ```SummarizedExperiment``` objects

#17 cathalgking opened 2 months ago
4
filter_se function

#16 fedeserral opened 2 months ago
1
Continuous covariates?

#15 m-pauper opened 2 months ago
1
DEP2 Shiny Heatmap Error on Mac

#14 EEnim opened 3 months ago
1
DEP2::plot_pca() only plots a maximum of 6 replicates

#13 1Moe closed 1 week ago
1
len_limit not found

#12 offbrandcereal1 closed 3 weeks ago
1
hypothesis testing error - ```contrasts can be applied only to factors with 2 or more levels```

#11 cathalgking closed 3 months ago
6
reduce font size for heatmap

#10 cathalgking closed 1 month ago
1
check_enrichment_depends() error！

#9 lwlive closed 3 months ago
2
Setting up a paired analysis

#8 luizalmeida93 opened 4 months ago
1
```impute()``` with zero values

#7 cathalgking closed 4 months ago
3
Imputation is not reproducible, irrespective of set.seed()

#6 1Moe closed 3 months ago
1
Get significant protein using pvalue instead p.adj

#5 enriiquee closed 5 months ago
1
Using DEP2 without meta-data

#4 cathalgking closed 3 months ago
12
Missing values lead to mis-labelling of points in DEP2::plot_volcano()

#3 1Moe closed 5 months ago
3
Error in get_signicant

#2 gremame closed 5 months ago
2
Master

#1 mildpiggy closed 1 year ago
0