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Hey guys, hope the July hols were good!
I've came across another error with this tool when I run many phenotypes in parallel. Here is an example command:
```
python autoreporting/Scripts/main.p…
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I've tested out OADP and I'm quite happy with the results. It's not absolutely perfect, but it looks to be the best projection method I've tried, aside from smartpca's computationally insane `shrinkmo…
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Hello @nextstrain/portuguese!
The situation report from 2020-04-10 is ready to be translated to Portuguese. This week’s report is a little bit shorter than usual but hopefully still informative :…
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The aim of this fwGWAS method is increase to GWAS power by weighting sequence variants based on their functional annotation, and therefore discover novel associations that were not identified with the…
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I've been trying to implement a seating planner using genetics for a little while now, with no avail. All generated output are crap and don't follow any rule I've implemented.
Basically, a table is…
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With a structured array in NumPy, it is possible to create a record that has a non-trivial shape of its own in addition to the shape of the recorded array. An example use case would be having a record…
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We would like a persistence format for Dask.dataframes that can scale to multiple machines. Solutions like HDF5, BColz, Castra are single-file-system only and have their own issues besides. Solution…
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I am trying to understand how to implement an evolution with the following task:
suppose we have 3x3 integer matrix (3 rows, each row contains 3 integers)
each integer is in [0..10] range
evoluti…
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In order to parse an indexed event, it is not enough to simply have the `data` field of the `Change` object, you also will need the `topics` field. See the [definition of the decoding schema](http://s…
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**URL**: http://learn.genetics.utah.edu/content/epigenetics/rats/
**Browser / Version**: Firefox 55.0
**Operating System**: Mac OS X 10.12
**Problem type**: Video doesn't play
**Steps to Reproduc…