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### Introduction
The following consolidates multiple C2M2 Submission Generator issues into one.
- Troubleshooting details for the 2Q2021 C2M2 submission from which these issues were distilled ar…
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VR needs to have a path for representing translocations.
Allele is currently defined as a contiguous sequence change at a single location. Translocations and junctions are unlikely to fit in that m…
reece updated
6 months ago
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We are looking into using replicate roles for samples derived from environments, e.g. a sample drawn from a lake with the intention of sequencing (or even a non-biological chemical analysis).
Looki…
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I am trying to download sequence data from _E. coli_ samples within the state of Washington - it's about 1283 sequences, which I know is a lot. The problem that I am running into is that entrez_search…
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Preferred Term: long-read RNA sequencing assay
Synonyms: long-read RNA-seq
Definition: An assay that determines the sequence of an RNA molecule using single-molecule technologies to allow longer rea…
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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Hi,
I keep encountering an error while running JUM step A. I am using JUM 3.0.0.
The error is:
"ERROR: Sort order was unspecified, and file treat1Aligned.out.sorted.bed is not sorted lexicograph…
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Hi Developer!
I've been working with the pipeline described in the Nature Protocols paper (2016). I've done everything up to the ballgown step. Instead of using ballgown, I've used prepDE.py to get…
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Interesting observation on timeline, to be further investigated and included under legal response:
1. **The truth is coming! Wuhan was brought into the ditch in this way ... article by Chinese Lawyer…
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Hi,
I am really interested in applying this tool for direct RNA sequencing data after reading this [paper]( https://www.biorxiv.org/content/10.1101/2023.03.29.534691v2.full). Could you clarify in …