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The user guide describes how purity estimation is done for DNA sequencing. But, could a couple of sentences be added that comment on how feasible it is to do with RNA sequencing? It would be interesti…
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Why does the first constructor in the AlignmentModel have this message:
System.out.println("Entered the WRONG Alignment model ");
As far as I can tell, the only difference is that the second …
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Hello everyone, I have 1000 samples, but the DNA concentrations for more than 600 samples are 0.1ng/ul from Picogreen (pre-PCR). Is it necessary to identify contaminants by frequency where the DNA con…
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editor preferred term: Ion Torrent Ion PGM
alternative terms: Ion PGM System, Ion Torrent PGM, Ion Torrent PGM System
textual definition: Ion Torrent Personal Genome Machine (PGM) is a reliable semi…
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editor preferred term: Ion Torrent Ion Chef
alternative terms: Ion Torrent Chef, Ion Chef System, Ion Chef
textual definition: Ion Torrent Ion Chef is a semiconductor sequencing technology manufactu…
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Hi,
I read your interesting paper and wanted to try this pipeline. I have some circular DNA reads produced by the Circle-seq method and sequenced by nanopore. I am wondering if this pipeline would …
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Hello,
I want to use the csa_wt index for counting DNA-substrings of variable size in a file containing DNA sequencing reads. The file looks like this, i.e. the reads are separated by newline chara…
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* `barcode` -> `dna_region`
* 2 primers
* table output consensus
* table output identification
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- [ ] core
- use most or all
- [ ] environment field
- use most or all
- [ ] investigation field
- [ ] experimental_factor
- [x] neg_cont_type
- [x] pos_cont_type
- [ ] project_nam…
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### Problem
Neighbouring rows in assay tables can point to separate data collections defined by e.g. the last material name via the dna_sequencing plugin. This is however not communicated by the iROD…