-
Hi,
I have two queries regarding the `coverage.stats` file that gets updated in the `data_repo` folder everytime we run AmpliconArchitect for a particular sample -
1. what are the different column…
-
hi~ sir:
my bams all are more than 30X wiht B37。
Is AmpliconArchitect very slow when run on such large bam?
Waiting for your reply,thanks。
-
Hi,
I'm testing one of our samples. I keep receiving this BAM file input error. Could you please provide insight on this? Or anything I may miss for running the workflow?
Best,
TC
```shell…
-
Hi,
I have a question about potential filtering steps for the decoil output.
I used Decoil on a sample and found 43 ecDNA, which was more than I was expecting. I have also used coral on the same…
-
Hi,thank you for your work. I tried to use prepareAA accompanied with AA to detect ecDNA on mouse but found there calls a error when I entered the command line.
```
(HRenv) [renhb@localhost ~]$ p…
-
Hi,
I have multiple 30X WGS data and want to try AA on it. As mentioned in other issues, 30X is too large for AA and downsampling is recommended. But I'm not sure which one is the right way for downs…
-
When I run decoil-viz, I meet the error below:
```
processing file: template.Rmd
|........................ | 54% [draw_amplicons] R[write to console]:
Quitting fro…
-
### Description of the bug
The test profile is not working, appears to need samtools I think
### Command used and terminal output
```console
(base) [feshap@n102 ecdna]$ ~/raid/nextflow run nf-core/…
-
If I have this output from decoil, which files can I use to visualise any potential ecDNA. The manuscript mentions using gGnome
clean.vcf
config.json
coverage.bw
fragments_clean_1.bed
fragments_c…
-
Hi! I'm currently facing an issue while running Decoil: after going through various samples, I've encountered a persistent problem with one specific sample. The process seems to be stuck at a particul…