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madagiurgiu25
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decoil-pre
Reconstruct ecDNA from long-read data using Decoil tool
BSD 3-Clause "New" or "Revised" License
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Allow custom genomes
#23
madagiurgiu25
closed
3 days ago
0
Make Decoil compatible with more SV callers outputs
#22
madagiurgiu25
opened
4 days ago
0
decoil-pipeline failed at sv calling and No MD string detected
#21
madagiurgiu25
closed
3 weeks ago
1
Make Decoil compatible with VCF files generated by different SV callers
#20
madagiurgiu25
closed
1 month ago
0
Discrepancy in ecDNA count between `decoil-pipeline -f sv-reconstruct` and `decoil reconstruct` using BigWig files
#19
RP-Silk
opened
1 month ago
3
Problems with Decoil installacion from source.
#18
MJoseMo
closed
5 days ago
7
KeyError when running decoil
#17
eesiribloom
opened
2 months ago
4
Input VCF from somatic variant callers
#16
eesiribloom
closed
1 month ago
5
T2T Reference Genome
#15
thomasjay3
closed
3 days ago
2
adjusting decoil reconstruct parameters
#14
eesiribloom
opened
5 months ago
5
Genes contained within ecDNA
#13
eesiribloom
opened
7 months ago
0
Conda package for decoil
#12
madagiurgiu25
opened
8 months ago
0
ecDNA Filtering
#11
thomasjay3
closed
7 months ago
5
2 use singularity to run decoil
#10
madagiurgiu25
closed
8 months ago
0
Hope a command only for Decoil Reconstruction
#9
zhober
closed
8 months ago
2
No summary.txt file produced
#8
eesiribloom
closed
8 months ago
8
visualising the output of decoil
#7
eesiribloom
closed
8 months ago
3
parameters
#6
eesiribloom
closed
10 months ago
3
Stuck at "Combine simple circles" step while running Decoil
#5
zhober
closed
8 months ago
14
Use conda to install Decoil
#4
madagiurgiu25
closed
8 months ago
8
Use pip to install Decoil
#3
madagiurgiu25
closed
2 weeks ago
1
Use singularity to run Decoil
#2
madagiurgiu25
closed
8 months ago
3
An IsADirectoryError when generate summary.txt in the final step.
#1
Uigi1600
closed
11 months ago
6