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Dear Braker3 authors,
I would like to use the compute_accuracies.sh tool provided in Braker suite to check my annotation accuraty agaisnt a reference one.
I checked Braker3 and Galba publications…
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Hello, I am running `vg autoindex` to splice the minigraph-cactus full pangenome according to GENCODE v44 gene annotations in order to map RNA-seq reads. I have two questions:
1) By running the follo…
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**bug report**
I have a balanced translocation (CTX) case and it has several genes (475 genes) under PREDICTED_LOF. However, one CTX breakpoint hits an intron of a gene, whereas the other breakpoi…
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@kimrutherford has made a query so that we can track our genes in GO-CAMs
https://www.pombase.org/results/from/id/f99d8133-3206-4941-b44e-9314e7cae3d2
However, it seems that any part of the mo…
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When I ran AnnotSV using Singularity, it runs into error `couldn't open "/usr/local/etc/AnnotSV/application.properties": no such file or directory`. I manually checked the container and the file `appl…
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I tried to merge genes with overlapping regions using agat_sp_fix_overlaping_genes.pl but it failed because their CDSs don't overlap, is there any way to fix this? Thanks!
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Dear bakta team,
We ran bakta on several bacterial genomes, with >50% estimated compl. and
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I have a list of GO annotations created with [FANTASIA](https://github.com/MetazoaPhylogenomicsLab/FANTASIA). Therefore, I do not have protein ID values for many genes. However, this software seems po…
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The Ensembl link within the gene annotations track does not provide any additional information and should be removed
![image](https://user-images.githubusercontent.com/8413053/83417489-c8365c00-a3e…
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Source:
```
✗ curl -L -s https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gaf.gz | gzip -dc | grep URS000075D95B_9606 | cut -f2,3,9-12
URS00004176D4_9606 URS00004176D4_9606 F Homo s…