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Hello,
I am from Bangladesh University of Engineering and Technology. As for our final year thesis, we are using scMTNI to infer gene regulatory networks. But we are struggling to understand what is …
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### ERR output:
```
2024-07-17 17:46:40,496 - pyscenic.cli.pyscenic - INFO - Loading expression matrix.
2024-07-17 17:48:21,231 - pyscenic.cli.pyscenic - INFO - Inferring regulatory networks.
20…
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My data was on scRNA-seq and scATAC-seq on a group of mouse ILC cells. Following Shilu Zhang's method on github, I used liger to get the clustering results of the cells, but there were some issues tha…
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Hi!
Don't forget to add this part haha :)
hummus_object function results in ' no method for coercing this S4 class to a vector'.
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This is a meta-issue recording action items from a review of biomedical articles that cite SciPy and the results of a survey sent to authors of over 50 of these papers. In some cases, we can offer to …
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### Type
workshop
### Description
COURSE OVERVIEW
This course will introduce participants with the inference and analysis of biological networks from RNA-seq data using R and Bioconductor packages…
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**Submitting author:** @JonnyTran (Nhat Tran)
**Repository:** https://github.com/BioMeCIS-Lab/OpenOmics
**Version:** v0.8.8
**Editor:** @arfon
**Reviewer:** @arfon
**Archive:** 10.5281/zenodo.4731011
…
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How can i generate celltype_tree_ancestor.txt file? Thanks
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Hi, I recently came across ClearNLP and decided to give it a try.
I've used other NLP frameworks in the past and I am positively impressed by the overall quality of yours.
I've found some little bugs …
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Thank you for developing Pando, it's a really nice and convenient tool for multiomic data analysis!
Following up on questions in #48 and #52 about input data when dealing with multiple samples: whi…