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Hi @federicomarini
I happened to find this behavior on the "Counts Overview" tab. Let's say I use "airway demo" data and "filter DDS by threshold on row sums of the counts" and choose 10 the firs…
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**Describe the bug**
For some datasets where ResFinder ran on the raw reads report blaVIM beta lactamase resistance genes, there is no report of VIM genes at all in microSALT.
KS reports:
> För…
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**Description**
I'm running the tutorial and I keep getting the errors at the `prune2df` step like this:
```pytb
Exception: 'KeyError(\'Field "Snora5c" exists 2 times in schema\')'
[...]
Exce…
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你好，
在文章方法的这一部分：
【Sequence annotation】
Variable regions, including FRs and CDRs were inferred using IgBLAST (Ye et al., 2013). Next, we numbered the gene sequences according to the IMGT numbering cr…
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Dear authors,
I attempted to filter genes based on variance using the following code:
> adata = sc.read_h5ad(expr_path)
> adata.var_names_make_unique()
> sc.pp.filter_cells(adata, …
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Hi,
I encountered an issue with BMDExpress while recreating an experiment from a published paper. The analysis results I obtained using BMDExpress differed from those reported in the paper. After c…
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Have not been able to look at genes/proteins for minimum two days. Similar errors have been popping up all over the place. See below for details:
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### Please make sure these conditions are met
- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [x] (option…
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Hi Team,
Thank you for this wonderfull package.
I was working on simulating spatially variable genes using a dataset with approximately 1,000 genes and 15,000 spots. For fitting the marginal dis…
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I got a report that menstruation eggs do not fully work with the Animal Gene Inheritance.
Original chat:
```
H> Something odd going on in regards the biotech multi preg setting.
Also @Vegap…