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Could you throw some light on this error
bpipe.PipelineError: Error evaluating script '~/ximmer/eval/pipeline/config.groovy': No such property: HGFA for class: ~/ximmer/eval/pipeline/config.groovy
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Hi, I am wondering how to generate "human_mirna_SNP_pseudo_miRBase.fa" in "fasta.Libs" directory. It is quite different from "human_mature_miRBase.fa" as many miRNA ids are different between them in a…
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I am pasting an email conversation from Aaron best, our close collaborator and #4 patric user. Basically he discovered that you cant download private genome files the same way as public ones because…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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Hello, thx for great tool.
We are trying to process germline WGS samples and encountered that parallelization is not working,
After digging into source code we found [reason](https://github.com/et…
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Hi,
I was hoping to get some help as while I have been able to process most of my samples (3 of 4) from a recent HiC run using HiC-Pro, for one sample I am receiving the following error detailed i…
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Based on some discussion at https://github.com/lh3/seqtk/issues/62 I thought it could be useful to have a `-v` (invert) option for `samtools faidx` which would return the FASTA of the sequences **not*…
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Hello,
Can you apply this software to pigs?
Lv Jiayu
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Running ``sourmash plot --pdf --labels example.npy`` with ~200 signatures gives plots where the labels are too large and therefore overlap.
Looking at https://github.com/sourmash-bio/sourmash/blob/…
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Has anyone successfully run star-fusion on drosophila samples? I've tried to create the requisite genomes both with the current singularity star fusion release (1.12) and the older 1.9 versions using…