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Chris' idea for making genomics-workspace.cwl work on the servers:
- include activating the i5k environment in cwl
In terms of testing the above idea before full implementation:
- make a shell s…
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### What is the problem?
The older version of this lesson is still available online (https://datacarpentry.org/R-genomics/) although the link to the GH repo from that site is broken. @ErinBecker or @…
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Hi,
For SC5P chemistry, I should be able to define 0,0,16:0,16,26:0,26,0 for the 1st read and 1,0,1:1,0,1:1,0,0 for the 2nd read in -x parameter.
Can this be done?
Best
Pasi
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Hello!
I have some seqFISH data from Spatial Genomics generated by their 'genePS' system. I was wondering if anyone had some code to import this data into a SpatialExperiment S4 R/Bioconductor clas…
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Dear Peter,
We were hoping that hapCUT2 would allow us to skip LongRanger to phase variants. However, we are running into some issues, and I would like to check back with you regarding some questio…
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I got this error when I tested the parsing process from an excel file. Hope someone can help me with this
```
TypeError: Cannot read property 'sheets' of undefined
at _callee10$ (/Users/tvi/D…
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If it is too complicated/heavy to do the full filter, consider adding a second step filtering the results of the initial search further in the controller or directly on page.
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As a production used,
I want the fetching of files from PDC to always fetch the latest one,
So that we do not fetch corrupted data.
# Work impact
Answer the following questions:
- Is th…
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Hi and thanks for this beautiful comparative genomics tool.
I was trying out Genespace on our HPC system using the human and sheep assemblies from NCBI but ran into the following error when trying …