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**1. What were you trying to do?**
Construct spliced pangenome graph for further RNA-seq mapping with `vg mpmap`.
**2. What did you want to happen?**
Get a .pg spliced pangenome graph.
**3…
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Package: gdal[core,netcdf]:arm64-windows -> 3.7.1#4
**Host Environment**
- Host: x64-windows
- Compiler: MSVC 19.37.32822.0
- vcpkg-tool version: 2999-12-31-unknownhash
vcpkg-scripts v…
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Hi,
We have a use case related to https://github.com/theislab/anndata/issues/237 but slightly different.
We would like to store a second `obs` array ("sub-obs", where an observation is an individ…
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Hello,
**What I have done**
1) Used `ppgb` to build a graph genome with the `-v` parameter to directly use `vg deconstruct` in the pipeline, to generate a .vcf file
2) Used `vcfbub` to avoid…
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Found: @capacitor/android@3.6.0
npm ERR! node_modules/@capacitor/android
npm ERR! @capacitor/android@"4.0.1" from the root project
npm ERR!
npm ERR! Could not resolve dependency:
npm ERR! @capa…
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**Operating system**
Linux
**Package name**
Isoseq3 -- groupdedup
**Describe the bug**
Every time I run groupdedup I do not get dedup.fasta files. ill only get dedup.bam
**My code**
```…
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https://mp.weixin.qq.com/s/UyyAycW6HSN_dImo03Aj0g
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Hi,
When I run two sample processes as a test using GATKSVPipeLine.wdl, I get "error creating thread: Resource temporarily unavailable" in call-CNMOPSLarge. error occurred. In this case, some of th…
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I thought option `-l` (loose quotes) would allow me to have any quotes in tab-separated file that doesn't have any tabs inside the fields. Eg one of the fields (some address) looks like this:
`"Stree…
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Please answer these questions before submitting your issue. Thanks!
1. What version of Python are you using (`python --version`)?
Python 3.7.6
2. What operating system and processor architectur…