-
User metadata can be validated using pandera validation. This will allow for metadata field requirements based on a schema file. This will allow seqsender to automatically detect issues with user meta…
-
![image](https://github.com/sars-cov-2-variants/lineage-proposals/assets/78371872/1a3bd9f2-d481-4d26-a060-e16b16c398a7)
tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice4_gen…
-
To help users and potential collaborators, please update the readme to follow the flu doc style and explicitly call out how you like folks to submit issues, test issues, commit (eg, dev branches vs ma…
-
Parent: EG.5.1*( and sometimes its first descendents as EG.5.1.1* or else)
Gisaid Inquiry : **-C5835T,-G22927T,C22033A,G21718T,C22480T** (The latter two indicates EG.5.1*, C22033A for F157L, and th…
-
## Description
Some models and fields have unexpected names or have fields that are not used. Creating this issue to keep track of them.
- Rename Family model to Case
- Rename name field on Famil…
-
### **Description**
**Sub-lineage of:** HV.1
**Earliest sequence:** 2023-9-12, USA, California — EPI_ISL_18328538
**Most recent sequence:** 2023-12-5, USA, Minnesota — EPI_ISL_18636328
**Continent…
-
*************edited November 20***************
**TRACKER**
BA.2.86: -C6541T,A7842, C8293T, G8393A (new query thx to @aviczhl2 )
JN.1 QUERY: C18894T, T15756A, A7842, -C6541T
XDD Query : C6541T…
-
I don't think a proper query can be made to exclude everything else, given the fact that new separate lineages are popping up from time to time.
![image](https://github.com/sars-cov-2-variants/lin…
-
Need to automate the upload of files to these different sources
GISAID
- Need to fix header errors
Github
Google Cloud
- No need to wait for analysis to be complete to start this. In a fully au…
-
XBB.1.19.1> G1055A(Orf1a:D264N), G10465A, C15960T> C10186T> C28519T(Orf9b:T79I), A29237G(N:M322V)
Query: G23222A, G1055A, A29237G
Earliest Sequence: 03-26 Beijing, China EPI_ISL_17592189
Latest…