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Hi,
I have been trying to use HLA-LA for illumina standard WES data. Unfortunately, I'm running into a BWA error after the edge path generation:
```
[ Wed Jun 24 19:10:29 2020 ] extensionAlign…
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Title :Prediction of SARS-CoV-2 epitopes across 9360 HLA class I alleles
# General Information
## Please paste a link to the paper or a citation here:
Link: https://www.biorxiv.org/content/10.…
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Hi,
I tried to launch T1K on my data, but got segfault with the following trace
```
#0 0x000055555556cd03 in SeqSet::SetSeqExonInfo (exons=std::vector of length 26, capacity 32 = {...}, seqIdx=1…
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Hi,
Thank you for developing this tool which is quite easy to use!
I am wondering if SpecHLA could also be used to detect somatic HLA mutations since we have paired tumor and normal WES or RNA…
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Hi Frank,
First of all congrats and thanks to share this great tool!
I've managed to run it on a small subset of our own patients. We usually test the immunogenicity of neoantigens as longer ep…
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Hi @cdarby
Thanks for making this tool! I'm having some trouble interpreting the outputs, and I'm hoping you can help.
So I've run the pipeline twice now on two different 3' scRNA-seq PBMC data…
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[Pantaleo G, Demarest JF, Soudeyns H, Graziosi C, Denis F, Adelsberger JW, Borrow P, Saag MS, Shaw GM, Sekaly RP, et al. Major expansion of CD8+ T cells with a predominant V beta usage during the prim…
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using current commit, in a docker / conda environment
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docker run --rm -v `pwd`:/data -w /data rna-hla-hlapers \
/bin/bash -c '/opt/conda run --no-capture-output -n hp-env…
jfass updated
2 years ago
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### Instructions
The github issue tracker is for bug reports, feature requests, and API documentation requests. General questions about how to use the GATK, how to interpret the output, etc. should…