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Afternoon, thanks very much for providing CARD to the community, its been very helpful.
I had one question regarding the imputation process as I am seeing some strange behaviors for a couple of gen…
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@falexwolf, @flying-sheep
From the discussion on #45, I think some more discussion should be had as to what imputation methods are to be included in scanpy. Validation of and comparisons between …
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looking at #73 and #74 maybe what we really should do is consolidating it into a new function and deprecating some functions (irmi, rangerImpute and regressionImpute) ?
@matthias-da @GregorDeCillia @…
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Hi Ruochi,
Nice work!
When I use Higashi to impute the data with 10K resolution, the program always breaks due to memory limitations. So can I impute some of the cells in this data set using a mod…
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This ocassion I’d like to ask for some assistance regarding the installation of ForeSeqs on uppmax for sequence imputation:
https://github.com/ddarriba/ForeSeqs/releases
It seems like a requirem…
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I did a benchmark over the 2 imputation methods over following procedure
1. Run a small imputation benchmark on KNN and softImpute(SVD)
1. subset the first 10,000 of the CpG sites with totally …
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### 1. Feature description
Add the `customized_loss_func` feature currently available in SAITS to other imputation models.
### 2. Motivation
Currently `saits_loss_func` is used in `class _Inf…
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Missing values: Identify missing values using isnull() and decide how to handle them (imputation, removal, etc.).
Data formatting: Ensure that all columns have the correct data types (e.g., convert…
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### To Do List
There are two versions of EXTEND needs to be checked.
**For the imputed version**
- [x] match sample ID with the pheno and DNAm, 928 samples left
- [x] check if the data has bee…