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Hello,
I work with infercnv version 1.14 and I had a problem with the dendrogram and the final result which is completely different from the one I obtained with infercnv version 1.9
I would lik…
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Hi,
I was playing around with the different threshold parameters and realised that the same run can yield different number of clusters.
```sh
python pae_to_domains.py *_predicted_aligned_error…
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Hi @vtraag - thankyou for this amazing repo. It has been immensely useful.
I have a feature request - can you add an additional argument that fixes the number of communities ? Say, if I want 5 comm…
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Thank you and your team for inventing such a user-friendly tool. I encountered some issues while using infercnv, which left me very confused.
Firstly, in the CreateInfercnvObject function, if a fi…
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Hi,
I am trying to use Python installed within a Python virtual environment on a Mac (Catalina) in order to use the Leiden algorithm within Seurat FindClusters(). Running `pip freeze` in the virtu…
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The algo finds many communities which are made of just one node, even when these nodes are not isolated. That is not very useful and actually on large networks, this creates hundreds of communities wh…
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Hi all,
Quite pleased with the graphology library, especially with the sigma visualization. Thanks for developing it!
I tried to use the Louvain community detection algorithm but the resulting cli…
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## Is your feature request related to a problem? Please describe.
Would be good to standardize conventions for certain parameters/descriptions during our effort to improve the API.
For example, fo…
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I am having trouble adjusting my Giotto matix. I have inputted the following code:
d45
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Hello, what's the current roadmap for jaxopt migration into optax? Will the scope of jaxopt be maintained, or will a trimming/expansion of features happen?
EDIT 27 October, 2024:
Dear all, based…