-
Transformations from ligand 0 to ligands 56-60 appear to have failed:
JSON entries
```JSON
"55": {
"JOBID": 55,
"directory": "RUN54",
"end": 56,
"ff": "…
-
Several laboratories would like to use YANK for computing free energy differences upon protein mutations, either for peptide ligands or protein targets.
This functionality would require a way to modi…
-
Hi ,
Thanks a lot for this useful tool !
I'm running Liana and i'm curious that you cannot provide methods to generate Chord diagram or heatmap as in the liana R wrapper.
Have you planned to…
-
Dear Omnipath team,
I would like to know if it is currently possible to access all data in Omnipath using the Cytoscape plugin?
Or will it miss certain interactions when compared to OmnipathR and py…
-
Thank you for releasing updates, I really appreciate it. By the way, I've noticed that the latest release of CE-Symm (version 2.2.2 from February 2022) is having issues retrieving a structure from the…
-
Hi CellChat Team,
I am encountering an issue where an arrow appears to be missing when I run netVisual_chord_gene on the "CX3C" pathway. Running other pathways produce chord plots as expected with…
-
Dear all,
I have a two GPUS (1080Ti) server includes two CPUs, when I perform the test command:
build_mpirun_configfile "yank script --yaml=p-xylene-implicit.yaml"
I will get the error:
b…
-
It is totally awesome and grateful to share these useful algorithms in MolAICal. I carried out the molecular generation (-denovo grow) using your example in the 000-quickStart, but these results, gene…
-
This might be true for a few different examples, but if I try:
```
asap-docking cross-docking --ligands input/lig_0.smi --pdb-file input/NP_722463.1_lig_0.pdb --target ZIKV-NS2B-NS3pro --cache-dir p…
-
Example gepi input: AList: 196
yields:
- PMC id:
- PMC4303521
- sentence:
- The activated AHR/ARNT complex binds dioxin-response elements (DREs) in the upstream promoter of AHR-regulated gen…