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symmetry
:ferris_wheel: Detect, analyze, and visualize protein symmetry
GNU Lesser General Public License v2.1
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Fixing fasta output when input from file
#117
josemduarte
closed
2 years ago
3
QuatSymm FASTA output fails
#116
AntoniyaAleksandrova
opened
2 years ago
12
Retrieving structures from the PDB in CE-Symm 2.2.2
#115
AntoniyaAleksandrova
opened
2 years ago
6
UNK residues
#114
AntoniyaAleksandrova
opened
2 years ago
2
Error running on Alphafold models
#113
sbliven
closed
2 years ago
4
Bump log4j to 2.17.1
#112
sbliven
closed
2 years ago
0
mvn package does not work. [ERROR] Failed to execute goal on project symmetry-core:
#111
matskohe
closed
2 years ago
3
Bump log4j-core from 2.16.0 to 2.17.0
#110
dependabot[bot]
closed
2 years ago
0
Bump log4j-api from 2.16.0 to 2.17.0
#109
dependabot[bot]
closed
2 years ago
0
Bump log4j-core from 2.15.0 to 2.16.0
#108
dependabot[bot]
closed
2 years ago
0
Bump log4j-api from 2.15.0 to 2.16.0
#107
dependabot[bot]
closed
2 years ago
0
Bump log4j-core from 2.14.0 to 2.15.0
#106
dependabot[bot]
closed
2 years ago
0
Warning on java 11+
#105
sbliven
closed
2 years ago
1
CeSymm broken on many java versions
#104
sbliven
closed
2 years ago
4
Update dependencies
#103
sbliven
closed
3 years ago
0
Bump junit from 4.12 to 4.13.1
#102
dependabot[bot]
closed
3 years ago
0
Bump log4j.version from 2.5 to 2.13.3
#101
dependabot[bot]
closed
3 years ago
0
Create FASTA writer for QuatSymm multiple alignment
#100
lafita
closed
3 years ago
8
Output repeats alignment in QuatSymm resutls
#99
AntoniyaAleksandrova
opened
4 years ago
3
Merge BioJava5 branch
#98
sbliven
closed
5 years ago
1
Support Java 9+
#97
sbliven
closed
4 years ago
3
Improve readme
#96
sbliven
closed
4 years ago
0
Increase max heap size to 2G (Fix #94)
#95
sbliven
closed
6 years ago
0
Increase Java memory
#94
lafita
closed
6 years ago
1
Add LICENSE
#93
sbliven
closed
6 years ago
0
NPE with RC3
#92
sbliven
closed
6 years ago
1
CE-Symm fails with 'does not look like a valid mmCIF file!' errors
#91
sbliven
closed
6 years ago
3
Multi Model X-RAY Structures (2Q4M)
#90
lafita
opened
8 years ago
5
Incorrect axis for d2f9ca1
#89
sbliven
opened
8 years ago
1
Poor handling of short repeats
#88
sbliven
opened
8 years ago
1
JRE Exception Aborts CE-Symm Batch Calculations for Large Datasets
#87
lafita
closed
6 years ago
11
Hierarchical Symmetry Significance
#86
lafita
opened
8 years ago
0
Fix #83
#85
lafita
closed
8 years ago
0
NaN RotationAxis in CeSymm
#84
lafita
closed
6 years ago
2
Stats Output Axes Information Multivalued
#83
lafita
closed
8 years ago
1
Use All Repeats to Update a Symmetry Axis
#82
lafita
closed
8 years ago
1
Refactor the CeSymmMain into separate Packages
#81
lafita
closed
8 years ago
0
Add --axes output format to CE-Symm
#80
sbliven
closed
8 years ago
0
Recursive Point Group Determination
#79
lafita
opened
8 years ago
0
Multiple Superposition of Repeats
#78
lafita
closed
8 years ago
2
Better Representation of Hierarchical Symmetry
#77
lafita
closed
8 years ago
1
Errors runn CE-Symm offline
#76
sbliven
opened
8 years ago
2
Determine optimal Symmetry Group axes given subunit (repeats) alignment
#75
lafita
opened
8 years ago
1
Detect duplication events from phylogenetic tree of symmetric repeats
#74
lafita
opened
8 years ago
1
Use sequence similarity contribution in the MC score
#73
lafita
opened
8 years ago
2
Better visualization of multiple axes
#72
sbliven
closed
8 years ago
4
Improve CeSymm multi-threading efficiency
#71
lafita
closed
6 years ago
1
Smarter window titles
#70
sbliven
closed
8 years ago
1
Parameter GUI not updated between runs
#69
sbliven
closed
8 years ago
1
CE-Symm returns empty alignment for short proteins
#68
sbliven
closed
8 years ago
1
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