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symmetry
:ferris_wheel: Detect, analyze, and visualize protein symmetry
GNU Lesser General Public License v2.1
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Show symmetry alignment panel in CeSymmMain without args
#67
sbliven
closed
8 years ago
0
Use random seed by default in optimization
#66
sbliven
closed
8 years ago
2
Speed up orient command
#65
sbliven
closed
8 years ago
1
Display order more clearly in output
#64
sbliven
closed
8 years ago
2
Identify SSE in symmetric repeats/subunits
#63
lafita
closed
8 years ago
1
Merge all symmetry repositories
#62
sbliven
closed
8 years ago
0
Remove ava-core dependency
#61
sbliven
closed
8 years ago
1
Merge all rcsb/symmetry* repositories
#60
sbliven
closed
8 years ago
1
Move Internal Symmetry Code to BioJava
#59
lafita
closed
8 years ago
4
New DS to store Symmetry Axes, used to constrain Optimization
#58
lafita
closed
8 years ago
0
Use MultipleAlignment DS as a symmetry return
#57
lafita
closed
9 years ago
4
Improved OrderDetection
#56
sbliven
closed
9 years ago
0
MultipleAlignment Integration to Symmetry
#55
lafita
closed
9 years ago
1
Minor fix after last changes in biojava's Calc
#54
josemduarte
closed
9 years ago
0
SINGLE Refiner incorrect in 2I5I.A
#53
lafita
closed
9 years ago
1
Bug fixes in SymmetryGUI
#52
lafita
closed
9 years ago
0
Add nucleotide support
#51
sbliven
closed
9 years ago
0
Bug fixes in MCRefiner
#50
lafita
closed
9 years ago
0
Symmetry GUI and MC optimization
#49
lafita
closed
9 years ago
0
Master
#48
lafita
closed
9 years ago
4
CESymmParameters: delete maxNrAlternatives?
#47
lafita
closed
9 years ago
2
CeSymm.align method produces java.lang.IndexOutOfBoundsException
#46
lafita
closed
6 years ago
5
Update to BioJava 4.0.0
#45
sbliven
closed
9 years ago
1
CESymmMain stat header is wrong
#44
sbliven
closed
8 years ago
1
Pom changes & CESymm improvements
#43
sbliven
closed
9 years ago
0
CE-Symm uses default max gap size
#42
sbliven
closed
8 years ago
3
Add support for alignment of local files
#41
andreasprlic
closed
8 years ago
3
Add maximum RMSD for alignment threshold
#40
andreasprlic
closed
8 years ago
4
Running tests modifies resources
#39
sbliven
closed
8 years ago
7
NPE running on 1z6o.M
#38
sbliven
closed
10 years ago
0
Tests don't all pass
#37
sbliven
closed
10 years ago
4
Improve CEsymm visualisation
#36
andreasprlic
closed
8 years ago
4
Port census2 tests to census3
#35
dmyersturnbull
closed
8 years ago
1
Various pending changes and fixes
#34
dmyersturnbull
closed
10 years ago
0
CE-Symm uses trivial alignment in d1n7na1
#33
dmyersturnbull
closed
9 years ago
4
Filter by name does not work on source.rcsb.org
#32
andreasprlic
closed
8 years ago
4
Display issue on d1qhab1
#31
dmyersturnbull
closed
10 years ago
3
Remove ava_core as a dependency
#30
dmyersturnbull
closed
8 years ago
2
CeSymm runs are not independent
#29
sbliven
closed
8 years ago
7
Expanded CompareBioassemblies to check bioassembly creation on the fly
#28
pwrose
closed
10 years ago
0
Downgraded vecmath methods to old version. Misc. code changes and
#27
pwrose
closed
10 years ago
0
Log4J logging appears broken
#26
dmyersturnbull
closed
10 years ago
0
Fixed colorBySymmetry for helices, do not report global
#25
pwrose
closed
10 years ago
0
Enabled short subunits, if at least 50% are short. Hardcoded a few
#24
pwrose
closed
10 years ago
0
Changed criteria for distinguishing cyclic from helical symmetry. Adopted clustering to two pdb structures.
#23
pwrose
closed
10 years ago
0
Implemented helical symmetry detection and refactored symmetry related
#22
pwrose
closed
10 years ago
0
Ensure that open files are closed to prevent resource leaks
#21
epeisach
closed
11 years ago
0
Merge latest SymmRefiner changes
#20
sbliven
closed
11 years ago
0
Guarded against null pointer exceptions.
#19
pwrose
closed
11 years ago
0
Added parameter to limit number of combinations in local symmetry calculations.
#18
pwrose
closed
11 years ago
0
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