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Hi Talley,
while I've mainly been using my own lls_dd tool for processing lattice data, we are running an internal workshop next week and I also want to show users how to use LLSpy.
However, I …
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Opening this issue to continue the discussion with @dmilkie from here:
https://github.com/hammerlab/flowdec/issues/12
I don't think we'll get the deconv running in realtime even with `flowdec` it…
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We do not see tiles for czi files because of autostitching now enabled by default.
See https://forum.image.sc/t/change-in-czi-tile-info-metadata-after-upgrade-to-zeiss-lightsheet-7/49414/4
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Hello,
I wanted to test the code and GUI today but I came across a compilation error when clicking running guiBuilder.groovy in Fiji.
![image](https://github.com/BIOP/lightsheet-brain-workflows/a…
abisi updated
6 months ago
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raw data v. basic processing?
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Hi
Thanks for making this plugin available.
When I use RedLionfish on large 3D arrays, the deconvolution takes extremely long.
I've included an example notebook here for reference:
https://gi…
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(Following on discussion from https://github.com/ome/ngff/pull/85)
As schematized by @constantinpape [here](https://github.com/ome/ngff/pull/85#issuecomment-1044233185), the current (0.4) version o…
d-v-b updated
2 years ago
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Currently the preprocessing is fixed, and based upon serial2p datasets. The preprocessing should be a seperate step, potentially leveraging existing napari plugins.
Options could include:
* No pre…
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Hi again,
After #1, I tried executing with an example dataset of mine.
I have made a separate copy of the parameters .yml file with, normally, correct raw/processed data paths, with:
HDF5 resavin…
abisi updated
6 months ago