-
为了避免报错,我将:
`plink_bin = get_plink_exe(),`
改成:
`plink_bin = NULL,`
再次执行2_linkage_disequilibrium_analysis.R,结果出现如下报错:
```
Clumping dOJem1, 2847 variants, using EUR population reference
Error in…
-
from Sudhansu:
> The peanut pheno public data is in our DS and below is the link to the two relevant files.
>
> The relevant DS directory: https://v1.legumefederation.org/data/public/Arachis_hyp…
-
Broad has release on dbGaP PCA on genotypes before imputation. Matching sample ID with self-ascertained ancestry information also found in dbGaP, I plotted PC1 vs PC2 below:
![officialpca](https://…
-
just got this running
Note that
Polyfun susie does not get to run as it is missing the environment
Also note the software is installed
## Code
```
columnsnames = echodata::construct_col…
-
Hi
I would like to know if it is possible to use this software to estimate recombination rates and then analyze population demographics using linkage-disequilibrium-based Ne estimation that use recom…
-
I just got this running
Note that:
MAF is not inferred even though I am passing Freq col, and I am seeting maf to calculate
## Code
```
columnsnames = echodata::construct_colmap(munged= FAL…
-
#### Introduction
I am a new PhD Student at the Walter and Eliza Hall institute in Melbourne, Australia. My project is based around methods and tools for the analysis of DNA methylation in long reads…
-
## 1. Bug description
Hi I am unable to properly run finemap_loci with a quantitative GWAS.
Few things to highlight so far.
- The sample size column to do finemapping for a quant GWAS is not …
-
Here are node categories from the merged monarch graph for nodes coming in from kg-phenio.
I think it might be a bit of a group effort to QC.
| category | prefix | …
-
Summarizing an email chain as an issue to allow for open discussion of the topic.
Mutations in telomeres and centromeres can lead to misleading results. So it makes sense to remove the trees from …