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Hi, @wwyi1828
Thank you for your work.
In the paper, it is mentioned that "we split the training sets into 75% training and 25% validation partitions."
Does the 25% validation subset partici…
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I am training a CLAM model which uses 256x256 patches at 20x magnification. My slides have max magnification of 40x. To obtain the 20x patches, I am patch them at 512x512 at 40x (patch_level=0) and th…
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I wonder if the below example from the notebook is intended. It seems there are 4 different heat map but somehow they overlap a lot with each other and it is hard to understand.
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Your 20x actually is 10x, and 5x autually is 2.5x. See this: https://github.com/mahmoodlab/CLAM/issues/115.
You don't change the custom_downsample in the extract_features_fp.py and patch_size in the …
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If I want to extract features of patches in TCGA-BRCA at 20x magnification, how should I set parameters in create_patches_fp and extract_features_fp?
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## Context
**Issue type**: bug report
**Operating system**: Mac OS 10.14.16
**Platform**: 64-bit
**OpenSlide version**: 3.4.1
**Slide format**: MRXS
## Details
Okay so I have a some probl…
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I am using the histolab library to process the downloaded WSI dataset. The otsu threshold was followed to cut out patches containing greater than or equal to 50% of the tissue area (w/o overlap). Howe…
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Hello,
I'm trying to extract and save features using HIPT/hipt_4k.py codes. However, It seems to works for only a 1-batch size.
Do you have any suggestions or tips for modifying the code to all…
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https://github.com/mahmoodlab/MCAT/blob/4fae60a1a1229ccd7a2cd1f43e0011636099847d/datasets/dataset_survival.py#L126
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https://github.com/mahmoodlab/MCAT/blob/b9cca63be83c67de7f95308d54a58f80b78b0da1/utils/coattn_train_utils.py#L19-L21
In pdb,'loader' is the type of 'torch.utils.data.dataloader.DataLoader',but when I…