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Hello Xuran! Thanks for your great package!
I've been able to run MuSiC cell type estimation analysis on my data of interes (brain). However, several cell types are very transcriptionally closely r…
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Hello,
I am working with a sc dataset of avian retina (6 samples), and I am using Seurat in R to analyze the data.
So far I have been able to run my clustering analysis and UMAP, and annotated…
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- [ ] Additional function parameters / changed functionality / changed defaults?
- [ ] New analysis tool: A simple analysis tool you have been using and are missing in `sc.tools`?
- [x] New plotti…
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I was trying to use the `FindConservedMarkers()` function to identify differentially expressed genes across multiple samples, but error messages persisted.
I saw some ongoing discussions about whic…
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Hello! I recently employed BayesPrism to deconvolve a bulk RNAseq dataset from a particular region of the embryonic mouse brain. This region (the striatum) houses specific neuronal populations that ex…
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Hi there,
I'm trying to do a DEG between groups. I applied these two codes:
Code 1:
`marker.genes.cluster
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I'm trying to use checkM but I have problems both using during binning and bin_refinment. After the end of the following message the job dies.
```
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hey @AlessioMilanese
I wanted to confirm if the minimum length used by all 10 marker-genes in mOTU2 is the same as [mOTU1 paper](https://www.nature.com/articles/nmeth.2693)?
Based on the [supplem…
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When we have proper data in the payload for the tabs on the experiment page the tabs should be appear on the page.
Currently none of the tab is appearing for `E-ANND-3` experiment given the following …
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Hi,
Perhaps a very silly question, but I am very new to the field of scRNAseq analysis (and R in general). I am currently getting familiar with Monocle 3 after having worked with Seurat, mainly to…