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Thank you for developing smetana!
I just have a general question. I'm currently building models with carveme by using the default command (`carve genome.faa`) without
specifying any media via `--gap…
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Dear All,
I was parsing a genbank file (more precisely a gbff file (ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/365/GCF_000009365.1_ASM936v1/GCF_000009365.1_ASM936v1_genomic.gbff.gz)) and du…
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Error in readMATmod("testLBba.mat") : object 'mod.gpr' not found
I'm trying to upload my own models, and grRules is very well present in my .mat file but I can't figure out why this error is showin…
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This is cool.
Few questions:
1. How do you compute the derivatives of SmO2? Just normal finite differences for both first and second order?
2. What must be the dynamic range (min/max) of SmO2 to …
ib00 updated
2 months ago
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Hello,
I'm a newbie in metabolic modeling, so please forgive if I'm missing something (basic).
I'm trying to model metabolic interactions using a set of GEMs obtained with CarveMe.
I'm testing se…
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Hi all,
I have been experiencing a peculiar problem with my genome-scale reconstructions being unable to take up any substrates/metabolites or excrete any products/metabolites. I provide a mineral …
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Hello,
I am experimenting with PROM code of Chandrasekaran 2010. I am using a COBRA model (.mat) from Palsson 2018 (https://bmcsystbiol.biomedcentral.com/articles/10.1186/s12918-018-0557-y), also i…
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add bioclimatic and design suggestions similar to the one present in Climate Consultant.
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**Please describe the feature**
As a user not familiar with Metabolic Atlas, I want a clear GotEnzymes home sign/search sign so that it is much easier to know where to perform a second search.
I…
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Before my questions, I would like to thank to all developers of this wonderful tool :)
I'm trying to check whether there is positive/negative correlation in growth between Species A and Species B.…