cdanielmachado smetana issues

cdanielmachado / smetana

SMETANA: a tool to analyse interactions in microbial communities

Other

55 stars 11 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Fails to find a minimal growth medium for photosynthetic organism

#46 GediminasA opened 2 weeks ago
0
Re-order output file to follow SIF formatting

#45 winatony opened 2 months ago
0
Comparative Analysis of MIP and MRO Across Variable MAG Compositions and Investigating Cross-Feeding Pathways in Microbial Communities

#44 Noob-Monkey opened 2 months ago
1
How to simulate large numbers of communities

#43 LiZhihua1982 opened 6 months ago
0
optimality is not an available tolerance parameter with this solver

#42 LiZhihua1982 opened 9 months ago
0
Adjusting the non-CarveMe GEMs to SMETANA

#41 wupeng1998 closed 1 year ago
0
Specifying compartment identifiers

#40 lauramhfur opened 1 year ago
0
CarveMe Models without Gap Filling for Smetana

#39 pbelmann opened 1 year ago
8
The model cannot be read.

#38 ChenCongZ opened 1 year ago
0
issues when add -c communities

#37 qikongwanli closed 1 year ago
2
Adjusting the non-CarveMe GEMs to SMETANA

#36 mohammadmirhakkak opened 1 year ago
2
smetana is not is not recognized as command

#35 Clem-Jos opened 1 year ago
1
Inconsistent results of MIP calculation and community minimum growth requirement

#34 EmmettPeng opened 1 year ago
2
Got an empty file with only the header

#33 zoelwl opened 2 years ago
3
Issues when running with a 10 member community

#32 amarsh26 opened 2 years ago
0
RuntimeError: No solver available.

#31 BurchamLab closed 2 years ago
1
Identifying minimal medium composition in detailed interactions

#30 franciscozorrilla closed 2 years ago
1
Cross-feeding interaction untraceable metabolites

#29 iuliachiciudean closed 2 years ago
3
MRO: Failed to find a valid solution

#28 iuliachiciudean opened 2 years ago
0
Reg constructing eukaryotic GSM - CarveMe

#27 NTDevika closed 2 years ago
1
smetana running error: Assertion failed: teta >= 0.0

#26 EmmettPeng closed 2 years ago
5
Query regarding nature of gapfilled carveme models for smetana use

#25 shreyanshumale closed 3 years ago
1
Atomic weight not listed for elements

#24 Rachita-Kumar closed 3 years ago
1
"Reaction R_EX_M_h2o_e_pool not found" error

#23 jdwinkler-lanzatech opened 3 years ago
3
N/A from MIP but value from MRO.

#22 BurchamLab opened 3 years ago
17
Compatibility with AGORA

#21 arianccbasile closed 3 years ago
3
Changes in result for -d and -g

#20 ntromas opened 3 years ago
4
Co-occurrent bacteria

#19 ntromas closed 3 years ago
4
Segmentation fault

#18 pbelmann closed 3 years ago
9
Different results and run time of detailed analysis

#17 vrmarcelino closed 3 years ago
2
Compare MRO and MIP across samples

#16 chenyj8 closed 3 years ago
1
No output rows in SMETANA detailed.tsv

#15 eltanin4 closed 3 years ago
1
SCS and MPS from detailed analysis are always 1

#14 nigiord closed 3 years ago
1
failing to find medium

#13 cdanielmachado opened 3 years ago
0
Smetana on Gapseq models

#12 arianccbasile closed 3 years ago
7
No solver available

#11 joeyxu95 closed 3 years ago
3
Different MIP and MRO scores for same input -SMETANA

#10 NTDevika closed 4 years ago
5
AttributeError: issues loading carveme models

#9 roschlec closed 4 years ago
1
Is it possible to generate the list of cross-fed metabolites between the pair of organism

#8 NTDevika closed 4 years ago
1
Model loading Issue with Smetana

#7 NTDevika closed 4 years ago
3
Pip install not working in python 2.7

#6 rafafernandes96 closed 4 years ago
2
switch to Reframed

#5 cdanielmachado closed 4 years ago
0
Development

#4 cdanielmachado closed 5 years ago
0
Can't load models to create a community

#3 cmrac closed 5 years ago
0
Failing calculations for global.tsv

#2 rdmtinez closed 5 years ago
2
Empty detailed.tsv

#1 rdmtinez closed 5 years ago
8