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As recorded in https://hmdb.ca/statistics#metabolite-statistics, there are 18,609 detected and quantified metabolites for human cell while in current Human-GEM, there are only about 8458 metabolites, …
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## Update 2021-12-06
To join the nf-core community, please visit https://nf-co.re/join
The most important step is to sign up to the nf-core Slack, which is the hub of the community.
Once ther…
ewels updated
2 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/xia-lab/OptiLCMS
Confirm the following by editing…
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Issues on how to generate files from OpenMS that can be used for FBMN (GNPS):
https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_GNPSExport.html
"What …
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HI
I am currently running a targeted metabolomics pipeline and I wanted to use pyQms for the same. I ran it on publicly available dataset to finalize the pipeline .
1. I first converted .raw files…
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Everybody is welcome to contribute a package. Simply reply to this issue and you will be added to the bioconda team.
**Edit:** *After you post here, we will email you an invitation through github t…
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Hi Rick,
Thank you for creating this excellent pipeline for nontargeted metabolomics analysis.
I have been using the IPO implementation to optimize feature grouping parameters in xcms3 (via `op…
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Selecting PI = Brodie and Omic type = MetaB results in the following error, with no data displayed in the results list even though the study lists there being 52 MetaB data.
- [x] Run through staging (by ingest pipelien devs)
- [x] Run t…
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After the pipeline components are deployed, we need to run the submissions for the prior (epic 1) data to populate the system and to sanity check all the provisioned elements and policies. Appropriat…