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Hi, I was running aMeta on microbial and full databases, and in both cases pipeline was running generally smoothly. However, I noticed that MapDamage is not generating all expected files with visualis…
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**Submitting author:** @wsmets (Wenke Smets)
**Repository:** https://github.com/LebeerLab/tidytacos
**Branch with paper.md** (empty if default branch): master
**Version:** v0.3.0
**Editor:** @diazrena…
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Dear @yinlabniu,
Thank you again for a very important tool to annotate CAZymes and identify CGCs in the microbial genomes of interest.
I am interested in examining how complete are the CGCs in my …
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A function in the package that could help to get spike-in-based calibration to total microbial load could be helpful.
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Update OwnerPrincipal for the Microbial Collection to
Owner Principal: | cn=All NIST,ou=groups,o=NIST,cn=Microbial Metrology,ou=groups,o=NIST
Remove cn=Genome Editing Consortium entry
![Image](htt…
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# Model Information
**Model Name**
Fitting Distribution To Microbial Counts_V2
**References**
[To the model!](https://knime.bfr.berlin/knime/webportal/space/Model_Curation/Download%20Uncurated%20M…
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Kraken2 is an excellent tools to align microbial sequences.
While in each run, loading the database is a rather time-consuming process.
**I wonder if future developers could provide a way to lo…
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Hello,
Kind of a weird 'issue' as it's more a 'forum like' topic.
I am completely new to JSDMs and have some questions about some thoughts I had about how to use them.
For instance :
- How i…
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Hello Team,
I simulated a shotgun metagenomic Nanopore dataset using NanoSim, containing:
65% bacterial sequences from 32 bacterial species
35% human sequences
For profiling, I created a Sylph…
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- [ ] Remove "Plankton" from the title (Needs to be fixed in planktonr)
- [ ] Add coastal stations
- [ ] Add microbial data locations