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It would be nice if npy2bdv would also offer the option to store data in a different datatype than int16. Maybe the writer could give a warning if data might have been altered? This is the case for an…
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Related to #35 , we might want to write a tutorial about image visualization.
Back in the days when I wrote [this notebook](https://github.com/BiAPoL/Bio-image_Analysis_with_Python/blob/main/image…
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Traceback (most recent call last):
File "C:\conda\envs\yolov5\lib\runpy.py", line 194, in _run_module_as_main
return _run_code(code, main_globals, None,
File "C:\conda\envs\yolov5\lib\runpy…
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The default value for patch overlap in inference is 25 pixels.
Segmentation tests of optical microscopy images with the default TEM model showed a strong patch pattern in segmentation, particularly…
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Hello, I'm interested in using your proposed depth super resolution for volume electron microscopy.
So far I've converted a stack of images to hdf5 ( not forgetting to rename the set to "raw"). The d…
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- Does this change have buy-in from other groups providing the same kind of data?
This should expand the file types of raw data that can be uploaded. Right now, the specification only allows `.scn`…
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Element name(s): Channel
Justification for the addition (brief and compelling):
your input here
Full description of the proposed addition (enough detail to implement):
your input here
**Sou…
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Since calibrating images from some feature with know size is a common task in microscopy, it would be nice to have such a tool in HyperSpyUI as well.
This can be done manually using the Line tool a…
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https://doi.org/10.1101/238378
> We present a conditional generative model for learning variation in cell and nuclear morphology and predicting the location of subcellular structures from 3D micros…
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[Neuronal morphometry directly from bitmap images](https://www.nature.com/articles/nmeth.3125)
- Published: 29 September 2014
- Tiago A Ferreira, Arne V Blackman, Julia Oyrer, Sriram Jayabal, Andrew…