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I propose to add not only new minimizers, but to revamp the minimizer tab to also allow modifying the minimizer's tweaking parameters (e.g. tolerances, stopping criterion, etc.).
I will start implemen…
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This is an issue related to vgteam/vg#3328.
We have assemblies for two genomes and I tried to build a graph with pggb for one of the chromosomes (about 1.8 Gb in length, mostly repeats). I have a 1T…
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I was trying to use the software but facing some issues. Error message I got is given below. Can you please help me with this?.
[M::worker_pipeline::2896.250*2.92] mapped 2720 sequences
[M::wor…
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Dear Kraken2 developers,
thanks a lot for this fantastic software! I really appreciated adding the --report-minimizer-data flag (borrowed from KrakenUniq) to latest versions of Kraken2, because bre…
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Hi @Maggi-Chen, I'm use the test supplied on the github page and I've run into the below errors
```
(fusions) ryleyd@minion:/data2/ryleyd/FusionSeeker$ ./fusionseeker --bam testdata/test.bam -o t…
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Hi @njdbickhart ! Awesome tool. When I run the wrapper script, I get a bunch of "Error parsing malformed sam at record: " errors. Otherwise, everything seems normal and I get the expected outputs…
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So for some reason, 2 out of many many many fastq are coming up with this error.
I am not very bioinformatics savy. So may need some help solving this error.
This error means I cannot sort my file…
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Hello.
Is there any limit to the length of chromosomes in chromap?
I'm working on an contact map for genomes with chromosomes greater than 2GB, and some other alignment tools seem to have length…
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How do you feel about a default OptimResult return type for all minimizers? I was thinking about a struct that contains:
* information about termination reason,
* runtime,
* number of function e…
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Hi,
I have met with another ignoring error, here is the log:
0.982908 k-mers per position
14994 DB matches per sequence
8 overflows
0 queries produce too many hits (truncated result)
58 sequen…