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#### Current behavior:
27 genes are discovered to be uncorrelated with their corresponding reactions in `Carnitine shuttle`.
| Gene | UniProtID | Reaction | GPR | Correlation| Manually check…
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In our mouse cDNA data, we hypothesise that mt-Atp6 and mt-Atp8 are encoded together on the mouse mitochondrial genome as a single polycistronic unit, which is demonstrated by observing co-expression …
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Hi @swolock,
thanks for this tool! It's blazing-fast and looks promising on the 10x PBMC data.
However, when working on a larger dataset of T cells, the histograms don't have the nice bimodal …
grst updated
10 months ago
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Hi,
I've been using exomiser to analyse WGS data for a long time, and it's the first time I notice this behaviour:
with some HPO IDs (in particular HP:0002597 and/or HP:0001626) I get 0 passed varia…
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It is common to store raw counts (=unnormalized) of all measured genes under `adata.raw`, while having normalized and unnormalized expression of a subset of genes (might be only protein coding genes, …
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Is it possible to use PhyloCSF on mitochondrial genomes, i.e. with an alternative genetic code?
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as an example MT-CYB will not work with the current setup (example can be seen and rerun to reproduce the error in our local cancermuts_data repository)
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Hi! I am using your functions to merge cellbender and cellranger h5 files to assess background removal. I have a snRNAseq experiment from 4x WT and 4x KO samples. Everything seems to work smoo…
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### Description of feature
The current stop-codon detection in ampliseq could be improved and supplemented with frame-shift detection by implementing [MACSE](https://doi.org/10.1093/molbev/msy159). T…
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Thanks for your work！
However， in 02_EC19001-SC2100428-Tissue-global.ipynb，it shows "done with scanpy-recipes with jupyterlab_1.3.1.sif".
I can't find it in the page. Could you offer it ? Thanks a l…