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## 2. New data formats
The most energy and creativity for machine learning projects is on organizing the data, optimizing the data structures, and extracting features. That being said, the current …
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Hi everyone,
I'm currently trying to use graphframes to compute triangle counts within my graph. My graph has around 250 Million nodes and 1.8 billion edges. I am able to use the connectedComponents(…
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**Describe the bug**
`igraph_motifs_randesu_no()` counts connected subgraphs of a given size. This function supports all sizes, not just 3 and 4. But it does not seem to return the correct result for…
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Dear Dr. Li,
Firstly, I would like to express my gratitude for providing such an efficient immune assembly tool. I have a few questions regarding the output files generated after running trust4 (T…
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Hello @zicanl
I was wondering if there is a way to not just count the total mappings of my motif in the inputGraph, but also to save the edges ( the subgraphs ) of my inputGraph that are indeed the …
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Hello-
I am interested in deploying qmotif to quantify telomeres however I have HG38 aligned bams, is it possible to just liftover the coordinates you provided in the configureration file to hg38 …
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Dear Rongxin,
thank you for the great tool and very helpful tutorial!
I have 2 questions regarding motifs:
1) HOMER does not work for me, I have HOMER v4.10 - is it compatible with this version?
2…
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Hi, I have a multiomic dataset scRNA+scATAC built on Seurat. My obj Is saved as .RDS file but I can also store It on h5ad file. How can I use LINGER starting from It?
Thank you
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goal is to check if proportion of peaks in each ChromHMM chromatin state shifts with cell cycle phase & DMSO treatment.
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Hi, Joshua,
Noticed your really nice work and follow your code in recent days. I tried to search for your email address but didn't manage to get that. So I have to drop my question here.
I had p…