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Hi, I'm new to pyclone and I would like to use it to inferring AML clonal architecture from tumor-only targeted DNA sequencing samples.
I'm not sure how to get information about major and minor c…
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We will deal with 7y6i and 7yg0 initially.
- [x] Obtain the mutated file for 7y6i and 7yg0, with best rotamer (chain A)
- [x] Take 1 mutation ( 475 Serine), morph the mutation and original, save …
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## 1980
Analysis was based on breast and ovarian cancer incidence in female first-degree relatives of the index patient.
* All individuals were censored at age 80 because incidence rates may be…
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I run mutation testing in CI environment (I am using CircleCI). The history is stored in CircleCI cache between runs to speedup the analysis. Everything works fine when there is a cache.
However, whe…
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Currently mouse hover shows incorrect information for RMS like below
![image](https://github.com/ImagingDataCommons/IDC-WebApp/assets/85526819/c16fc7d5-e5c9-4815-903e-075379aee608)
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1. On bioRxiv:
[De novo mutation rates in sticklebacks](https://www.biorxiv.org/content/10.1101/2023.03.16.532904v1)
2. Question
Mutation rate of Clupea harengus is 2.0 × 10-9 per base per gene…
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Hi,
I am struggling to run the step4 of the pipeline, I have the flanking.read produced but not the fullreads:
/home/cecile/Desktop/Postdoc_cecile/2_Zymo/4-Mutation_accumulation_analysis_TE_dyna…
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Hi,
It would be nice to have a link to the COSMIC database for the variants listed in the inherited analysis pipeline in Scout as it is in the somatic analysis pipeline today. Germline/mosaic varia…
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Thanks for the good material. I have a question about the alignment using bowtie2, here according to [`mutation_sequencing_analysis_script.sh`](https://github.com/aldob/iMUT-seq/blob/4476db76f2058d0af…
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A patient with a rare disease but without a diagnosis, was referred to dental treatment. They don't know how to code this patient. A functional analysis was done showing that the disease was caused by…