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Hi!
I'm running variant calling on a batch of 80 bovine WGS samples and the workflow is failing at the SV stage with Manta. I've previously tested it on 2 samples and that worked fine.
This is t…
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**Preferred term label:** Presacral Lymph node right and Presacral Lymph node Left
**Synonyms** I am not sure if is the same thing of Iliac lymph node but there is not laterality
**Defin…
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**Mondo term (ID and Label)**
MONDO:0006465 Thyroid gland oncocytic follicular carcinoma
**Reason for deprecation**
Many overlapping synonyms between these 2 terms.
NCI (http://purl.obolibrary.…
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As a researcher, I need to have access to the tokens of cardiac and cancer patients, so I can query if a patient is both a cardiac and a cancer patients.
- [ ] Get a machine on which websites can be h…
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# BUG/ERROR report
## System information
### Tripal Version:
* Drupal Version: 10.0.11-dev
* PostgreSQL Version: 13.11 (Debian 13.11-0+deb11u1)
* PHP Version: 8.2.7
### Issue descrip…
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I was looking at the overall taxonomy of ECTO and the reuse of ExO and NCIT classes seems unnecessary and may even detract from the quality of the ontology more than they add to it.
The two main i…
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COSMIC (v90) is currently not able to map 405 NCIt terms to EFO ([attached](https://github.com/EBISPOT/efo/files/4107729/NCIt_codes_not_mapped_to_EFO_COSMIC_v90.tsv.zip)).
Using OxO none map to EFO…
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Hello,
I am wondering about the classification of B Cell Deficiency as a syndrome
```
[Term]
id: NCIT:C4799
name: Deficiency of Humoral Immunity
def: "A broad classification of disorders whe…
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### Issue Name
Standardize Measurement Techniques
### Issue Description
Similar to what we've done for `healthConditions`, `species`, `infectiousAgent`, we need to standardize the ingested values f…
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Per user report:
I have been experimenting with the annotator found here:
https://bioportal.bioontology.org/annotator
Settings:
Text entered into annotator: invasive mammary carcinoma
Sele…
mdorf updated
2 years ago