NIAID-Data-Ecosystem nde-crawlers issues

NIAID-Data-Ecosystem / nde-crawlers

Harvesting infrastructure to collect and standardize dataset and computational tool metadata

Apache License 2.0

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#149 NikkiBytes opened 1 day ago
0
Update dataverse plugin

#148 NikkiBytes closed 2 days ago
1
[Metadata Improvement]: Apply funding helper consistently

#147 gtsueng opened 3 weeks ago
1
[Parser Fix]: BD2K LINCS DCIC changes requested by NIAID team

#146 gtsueng closed 1 week ago
1
[Parser Fix]: Investigate propagation of missing SRA metadata from Experiment-level records

#145 gtsueng opened 3 weeks ago
4
[Source]: NIAID Medium priority Resource Catalogs

#144 gtsueng opened 1 month ago
2
Malariagen Source

#143 DylanWelzel closed 1 month ago
0
[Source]: High Priority Resource Catalogs

#142 gtsueng opened 1 month ago
6
Added TopicCategory helper function

#141 DylanWelzel closed 1 month ago
0
[Source]: BioStudies ArrayExpress

#140 gtsueng opened 1 month ago
1
[Source]: Mass Spectrometry Interactive Virtual Environment (MassIVE)

#139 gtsueng opened 2 months ago
5
volume feature for plugins using sqlite caching

#138 jal347 closed 1 month ago
0
[Source]: Malaria Genomic Epidemiology Network (MalariaGEN)

#137 gtsueng closed 2 weeks ago
6
[Metadata Improvement]: Identify length limitations for ChatGPT inference

#136 gtsueng closed 1 month ago
6
[Source]: VEuPathDB collections

#135 gtsueng opened 2 months ago
6
[Source]: CryptoDB

#134 gtsueng closed 3 weeks ago
2
[Source]: AmoebaDB

#133 gtsueng closed 3 weeks ago
2
[Metadata Improvement]: Evaluate ChatGPT performance on measurementTechnique Extraction

#132 gtsueng opened 2 months ago
1
[Metadata Improvement]: Fix NIAID SysBio metadata in DDE

#131 gtsueng closed 1 month ago
7
[Metadata Improvement]: Validate species/infectiousAgent delineation heuristic

#130 gtsueng opened 3 months ago
0
[Parser Fix]: distribution.contentUrl for Zenodo

#129 gtsueng opened 3 months ago
2
[Metadata Improvement]: Generate Benchmark measurementTechniques data for standardization

#128 gtsueng opened 3 months ago
5
[Metadata Improvement]: Standardize Measurement Techniques

#127 gtsueng opened 3 months ago
2
Fix dataverse plugin

#126 NikkiBytes closed 3 months ago
0
[Metadata Improvement]: Generate Repository-level Metadata Compatibility Scores

#125 gtsueng opened 4 months ago
0
[Parser Fix]: DDE DefinedTerms `curatedBy` fix

#124 gtsueng closed 4 months ago
6
[Parser Fix]: OMICS-DI outbound links failing

#123 gtsueng closed 1 month ago
14
[Metadata Augmentation] Clean up alternateNames

#122 gtsueng closed 2 months ago
1
[Infrastructure] Enable submission of metadata corrections

#121 gtsueng closed 4 months ago
1
[Augmentation] Use EXTRACT to perform species and infectiousAgent NER

#120 gtsueng opened 7 months ago
0
[SOURCE]

#119 lisa-mml closed 8 months ago
0
[Parser Fix]: Add authors to Vivli

#118 gtsueng closed 1 month ago
1
[Parser Fix]: Adjust DDE's includedInDataCatalog field

#117 gtsueng opened 8 months ago
10
[SOURCE] Add BV-BRC Datasets

#116 mshukla1 opened 8 months ago
0
merge_sources

#115 jal347 closed 8 months ago
0
[Augmentation] add topicCategory values using ChatGPT

#114 gtsueng opened 8 months ago
8
[Augmentation] Enable record-level override of augmented metadata

#113 gtsueng opened 8 months ago
0
[Parser Fix]: Change SRA parser handling of 'isBasedOn' values

#112 gtsueng opened 8 months ago
0
[Crawler Fix] - Fix outbound link to resource and record names for MicrobiomeDB

#111 gtsueng closed 7 months ago
0
[Augmentation] Use citation to Pubtator mappings to pull species and infectiousAgent metadata

#110 gtsueng closed 4 months ago
6
Fix zenodo dupes

#109 jal347 closed 9 months ago
0
added NDEDataBuilder

#108 jal347 closed 10 months ago
0
Fix parsing and display of author information in BD2K-LINCS

#107 gtsueng closed 10 months ago
11
Refactoring of nde

#106 jal347 closed 11 months ago
0
Update Source suggestion Issue Template

#105 gtsueng closed 1 year ago
0
fixed flowrepo, added schema checking, and fixed pmid_helper

#104 jal347 closed 1 year ago
0
immport api update

#103 DylanWelzel closed 1 year ago
0
Flowrepository

#102 jal347 closed 1 year ago
0
Change Dryad conditions of access

#101 candicecz closed 1 year ago
1
[SOURCE] Add FlowRepository as a data source

#100 flaneuse closed 10 months ago
0