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Running the following command results in failure:
```
pvacseq run \
--iedb-install-directory /opt/iedb \
-t 10 \
-p test_vep_phased.vcf.gz \
-e1 8,9,10,11 \
-e2 15,16,17,1…
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* pvactools version: 2.0.1
* Python version: 3.7
* Operating System: Ubuntu
**Describe the bug**
While running the immuno.cwl workflow, a mismatch between annotated.expression.vcf.gz and phased.…
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I was wondering if you could elaborate how we should define the name of our MHC II alleles.
If I take a look at the output of list_mhc() it seems like the MHCII alleles are defined like this:
```bas…
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Hello,
I am using docker to run antigen.garnish and I think everything worked as intended so far.
However, when I run
```R
# predict neoantigens
result % garnish_affinity(.)
```
I get the fol…
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[NetMHCIIpan 3.1 class](https://github.com/jonasscheid/epytope/blob/5f5accea2a98dc8496f9d03cc99de65deb1850fb/epytope/EpitopePrediction/External.py#L3990) in `EpitopePrediction/External.py` is missing …
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I'm running your docker and trying to just run the foreignness and dissimilarity given a list of sequences, but seems to be getting warnings (or errors). I'm expecting just a table as output, but does…
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Issue related to:
https://github.com/griffithlab/pVACtools/issues/411
Hi @susannasiebert
I have gotten some time again to work on neoantigen prediction for our data. I am running version 1.5.7 …
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thanks a lot
* pvactools version:latest
* Python version:3.7
* Operating System:centos
**Describe the bug**
Failed to compile plugin Wildtype: Excessively long operator at /data/database/anno/…
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I tried to search my file and I got this msg at the end of my terminal. After awhile, i get the following msg in my browser GUI:
Traceback (most recent call last):
File "/mnt/c/Users/lym16/MhcVi…
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