richelbilderbeek bbbq_article issues

richelbilderbeek / bbbq_article

The Bianchi Bilderbeek Bogaart Question answered

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Create plot for follow up study

#265 richelbilderbeek opened 2 years ago
1
Do last things before acceptance

#264 richelbilderbeek closed 2 years ago
2
Use Frontiers LaTeX template

#263 richelbilderbeek closed 2 years ago
2
Collect all .eps files

#262 richelbilderbeek closed 3 years ago
1
Merge TeX into one big file

#261 richelbilderbeek closed 3 years ago
1
Create a text doc with only the legends

#260 richelbilderbeek closed 3 years ago
1
Create combined TIFFs

#259 richelbilderbeek closed 3 years ago
2
Check Frontiers zip again

#258 richelbilderbeek closed 3 years ago
5
Create rebuttal as PDF for submission

#257 richelbilderbeek closed 3 years ago
2
Article must refer to tables and figures ascendingly

#256 richelbilderbeek closed 3 years ago
1
Check rebuttal text

#255 richelbilderbeek closed 3 years ago
2
Fix split of PDF

#254 richelbilderbeek closed 3 years ago
1
Process feedback Maxim

#253 richelbilderbeek closed 3 years ago
1
Add coincidence interval in fig 2b

#252 richelbilderbeek closed 3 years ago
2
Process feedback Geert

#251 richelbilderbeek closed 3 years ago
1
Percentages in 2a and 2b must match

#250 richelbilderbeek closed 3 years ago
2
Process feedback Frans

#249 richelbilderbeek closed 3 years ago
4
Figure 2c -> 2b

#248 richelbilderbeek closed 3 years ago
1
How to query for MHC ligands?

#247 richelbilderbeek closed 3 years ago
1
Create new figure 2c

#246 richelbilderbeek closed 3 years ago
4
Create new figure 2d

#245 richelbilderbeek closed 3 years ago
4
Create new figure 2b

#244 richelbilderbeek closed 3 years ago
1
Create new figure 2a

#243 richelbilderbeek closed 3 years ago
1
Is it significant the overlapping of one residue for MHC binding?

#242 richelbilderbeek closed 3 years ago
3
Use correct MHC-II allele names for IEDB

#241 richelbilderbeek closed 3 years ago
2
IEDB: doc of API?

#240 richelbilderbeek closed 3 years ago
8
[DO NOT] Remove fig 1-4 from paper

#239 richelbilderbeek closed 3 years ago
2
Get ncbi_peregrine results

#238 richelbilderbeek closed 3 years ago
1
Need color or black-and-white pics? Color it is!

#237 richelbilderbeek closed 3 years ago
3
Check new Frontiers upload

#236 richelbilderbeek closed 3 years ago
1
Figure 2 has not explanation of what it is included in each graph. Which one is from MHC-I? MHC-II? Is all together?

#235 richelbilderbeek closed 3 years ago
1
How where MHC-I alleles chosen?

#234 richelbilderbeek closed 3 years ago
1
[bbbq_1_smart] Analyses of chance versus observed epitopes must include uncertainly estimates

#233 richelbilderbeek closed 3 years ago
8
Add legends, use color

#232 richelbilderbeek closed 3 years ago
7
Check TIFFs again, use color

#231 richelbilderbeek closed 3 years ago
5
[bbbq_article_issue_157] Do stats on TMH presentation of elution studies

#230 richelbilderbeek closed 3 years ago
5
[bbbq_article_issue_157] Add two immunopeptidomes studies

#229 richelbilderbeek closed 3 years ago
12
Write rebuttal before Nov 19th 2021

#228 richelbilderbeek closed 3 years ago
1
Check version Frontier sent to reviewers

#227 richelbilderbeek closed 3 years ago
1
Get Frans' masterpieces for figs 2 and 4

#226 richelbilderbeek closed 3 years ago
1
Fix 'Data Accessibility'

#225 richelbilderbeek closed 3 years ago
1
Something with figure 1

#224 richelbilderbeek closed 3 years ago
4
Create TIFFs that are not gray squares

#223 richelbilderbeek closed 3 years ago
1
Order figures chronologically

#222 richelbilderbeek closed 3 years ago
3
Create black-and-white images

#221 richelbilderbeek closed 3 years ago
0
Submit to PLoS Biology after biorxiv acceptance

#220 richelbilderbeek closed 3 years ago
1
Open up repos after Biorxvic acceptance

#219 richelbilderbeek closed 3 years ago
1
Process feedback Frans

#218 richelbilderbeek closed 3 years ago
0
Process feedback Maxim

#217 richelbilderbeek closed 3 years ago
1
Put on Biorxiv

#216 richelbilderbeek closed 3 years ago
2