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The spec: https://github.com/ome/ngff
A python library: https://github.com/ome/ome-zarr-py
A viewer: https://github.com/hms-dbmi/vizarr
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**Is your feature request related to a problem? Please describe.**
We need to look at Next-generation file formats (NGFF) (https://ngff.openmicroscopy.org/latest/) which use [Zarr](https://zarr.rea…
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As discussed in the feb. 2021 ngff [community call](https://forum.image.sc/t/next-call-on-next-gen-bioimaging-data-tools-feb-23/48386), and following this [image.sc thread](https://forum.image.sc/t/me…
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**User story**
```[tasklist]
### Tasks
- [x] Shapes - circles (with fixed radius)
- [ ] Shapes - circles with radius column
- [ ] [Shapes - polygons](https://github.com/vitessce/vitessce/issues…
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I am trying to read sample zarr files provided here: https://github.com/ome/ome-ngff-prototypes#data-availability
```log
dzenan@corista:~/tester$ ncdump -h file:///media/xeonatorC/Dev/ITKIOOMEZarr…
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The order of the `axes` entry in the topLevel .zattrs does not match the shape of the chunks. `_ARRAY_DIMENSIONS` order does match the chunk shape. Expecting the order of `axes` and `_ARRAY_DIMENSIO…
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When this was still named `faim-hcs`, we had this code to compute histograms and add it to the zarr `attrs`:
https://github.com/fmi-faim/faim-ipa/blob/7594dc679baef9715ec4d193557dae4c617372f2/src/f…
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If the user calculates Max Intensity Projection on every channel for every FOV, along with maybe some segmentation results, what would be the best way to store them in the new version of zarr store?
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I occasionally get this error when using dask to write to iohub arrays. @ziw-liu I'll try to come up with a reproducible example. Let me know if you happen to know what the problem might be.
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I just had a question that was not clear from the text of the spec #183 . It was easier to check https://raw.githubusercontent.com/ome/ngff/main/0.4/schemas/image.schema but it took me a while to find…