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fmi-faim
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faim-ipa
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
BSD 3-Clause "New" or "Revised" License
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[pre-commit.ci] pre-commit autoupdate
#184
pre-commit-ci[bot]
opened
22 hours ago
1
Improve IPAConfig
#183
imagejan
opened
1 week ago
1
[pre-commit.ci] pre-commit autoupdate
#182
pre-commit-ci[bot]
closed
4 days ago
1
Add detect_spots_2d.
#181
tibuch
closed
2 weeks ago
3
2D spot detection
#180
tibuch
closed
2 weeks ago
0
Logging with decorator
#179
tibuch
opened
3 weeks ago
0
Improve stitching performance
#178
imagejan
closed
3 weeks ago
1
Migrate conda build to recipe format v2
#177
imagejan
opened
3 weeks ago
0
Create ome-zarr from hdf5 container
#176
tibuch
opened
3 weeks ago
1
[pre-commit.ci] pre-commit autoupdate
#175
pre-commit-ci[bot]
closed
2 weeks ago
1
[pre-commit.ci] pre-commit autoupdate
#174
pre-commit-ci[bot]
closed
1 month ago
1
Plate conversion tweaks
#173
tibuch
closed
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#172
pre-commit-ci[bot]
closed
1 month ago
1
Add pixi utility modules
#171
imagejan
closed
1 month ago
4
[pre-commit.ci] pre-commit autoupdate
#170
pre-commit-ci[bot]
closed
1 month ago
1
Make create_logger code a little more concise
#169
imagejan
closed
1 month ago
2
Set logger level to INFO and extend test.
#168
tibuch
closed
1 month ago
1
Created logger does not log INFO level
#167
tibuch
closed
1 month ago
3
Fix or ignore remaining ruff linting issues
#166
imagejan
opened
2 months ago
0
Fix various code style issues
#165
imagejan
closed
2 months ago
2
Integrate examples into tests
#164
imagejan
opened
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#163
pre-commit-ci[bot]
closed
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#162
pre-commit-ci[bot]
closed
2 months ago
1
Fix scaling.
#161
tibuch
closed
2 months ago
1
Blob detection finds fewer blobs
#160
tibuch
closed
2 months ago
0
Rework blob detection to accept a list of scaling factors.
#159
tibuch
closed
2 months ago
1
Consider hatch-conda for mobie-related tests on CI
#158
imagejan
opened
2 months ago
1
Update stitching_utils
#157
fstur
closed
2 months ago
4
None wavelength
#156
tibuch
closed
3 months ago
2
[pre-commit.ci] pre-commit autoupdate
#155
pre-commit-ci[bot]
closed
2 months ago
1
Issue in stitching.stitching_utils.fuse_linear
#154
fstur
closed
2 months ago
4
CellVoyager: fix wavelength parsing
#153
imagejan
closed
3 months ago
1
CellVoyager: parse wavelength from 'Acquisition' instead of 'Target'
#152
imagejan
closed
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#151
pre-commit-ci[bot]
closed
3 months ago
1
Add typos pre-commit hook
#150
imagejan
closed
3 months ago
1
CI: upload to codecov
#149
imagejan
closed
3 months ago
2
Add tests for visiview
#148
tibuch
opened
3 months ago
0
Histogram computation and ome-zarr metadata
#147
imagejan
opened
3 months ago
3
Add config which exposes methods to make paths relative/absolute.
#146
tibuch
closed
3 months ago
0
Add spot and blob detection functions.
#145
tibuch
closed
3 months ago
1
ChannelMetadata: make wavelength optional
#144
imagejan
closed
3 months ago
0
Handle transmission channel metadata
#143
tibuch
closed
3 months ago
0
Add test for ImageXpress transmitted light
#142
imagejan
closed
3 months ago
0
Fix single field issue in _compute_z_spacing
#141
jluethi
closed
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#140
pre-commit-ci[bot]
closed
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#139
pre-commit-ci[bot]
closed
3 months ago
0
Shift ZIndex for whole field at once.
#138
tibuch
closed
4 months ago
0
Missing planes after stitching
#137
tibuch
closed
4 months ago
1
Add utilities to create and resolve paths relative to git-root dir.
#136
tibuch
closed
4 months ago
0
Add util to create and resolve paths relative to the git-root directory
#135
tibuch
closed
4 months ago
0
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