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fmi-faim
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faim-ipa
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
BSD 3-Clause "New" or "Revised" License
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Add config which exposes methods to make paths relative/absolute.
#146
tibuch
closed
5 months ago
0
Add spot and blob detection functions.
#145
tibuch
closed
5 months ago
1
ChannelMetadata: make wavelength optional
#144
imagejan
closed
5 months ago
0
Handle transmission channel metadata
#143
tibuch
closed
5 months ago
0
Add test for ImageXpress transmitted light
#142
imagejan
closed
5 months ago
0
Fix single field issue in _compute_z_spacing
#141
jluethi
closed
5 months ago
0
[pre-commit.ci] pre-commit autoupdate
#140
pre-commit-ci[bot]
closed
5 months ago
0
[pre-commit.ci] pre-commit autoupdate
#139
pre-commit-ci[bot]
closed
5 months ago
0
Shift ZIndex for whole field at once.
#138
tibuch
closed
6 months ago
0
Missing planes after stitching
#137
tibuch
closed
6 months ago
1
Add utilities to create and resolve paths relative to git-root dir.
#136
tibuch
closed
6 months ago
0
Add util to create and resolve paths relative to the git-root directory
#135
tibuch
closed
6 months ago
0
[pre-commit.ci] pre-commit autoupdate
#134
pre-commit-ci[bot]
closed
6 months ago
0
Remove pins from dependencies
#133
tibuch
closed
6 months ago
2
pydantic version
#132
tibuch
closed
6 months ago
0
Add `typos` pre-commit hook
#131
imagejan
closed
5 months ago
1
Labelling of row/column in HCS
#130
jeskowagner
closed
6 months ago
5
Re-enable uploading to codecov in CI
#129
imagejan
closed
5 months ago
0
CV z adjustment: respect simultaneous acquisitions
#128
imagejan
closed
6 months ago
0
CellVoyager Z adjustment: support simultaneous acquisition
#127
imagejan
closed
5 months ago
1
remove stitching_yx_chunk_size_factor in example
#126
jeskowagner
closed
6 months ago
0
Add legacy STK support
#125
jeskowagner
opened
6 months ago
1
Fix SinglePlane example
#124
jeskowagner
closed
6 months ago
3
Issue 122
#123
tibuch
closed
6 months ago
0
Converter with build_acquisition_mask creates invalid zarr container
#122
tibuch
closed
6 months ago
0
ImageXpress: support time dimension
#121
imagejan
closed
6 months ago
2
[pre-commit.ci] pre-commit autoupdate
#120
pre-commit-ci[bot]
closed
6 months ago
0
Use new test datasets for MolDev ImageXpress
#119
imagejan
closed
6 months ago
1
Consolidate StackedTile classes
#118
imagejan
opened
7 months ago
0
Use lower-case module names everywhere
#117
imagejan
closed
3 months ago
1
cellvoyager.StackedTile: consider making _paths field public
#116
imagejan
closed
3 weeks ago
2
Add processors
#115
tibuch
closed
3 weeks ago
2
Add spot-detection utils
#114
tibuch
closed
5 months ago
0
Rename repo to faim-ipa
#113
tibuch
closed
7 months ago
11
Consider using xarray-ome-ngff, or ngio
#112
imagejan
opened
7 months ago
0
Use dask.array.histogram iff dask array is provided.
#111
tibuch
closed
7 months ago
0
Add dask-array support to UIntHistogram
#110
tibuch
closed
7 months ago
0
Add convenience functions to use WellAcquistions with multiview-stitcher
#109
tibuch
opened
7 months ago
1
Sort possible keys before selection.
#108
tibuch
closed
7 months ago
1
Test for imageXpress mixed acquistion fails
#107
tibuch
closed
7 months ago
0
Squeeze missing axes.
#106
tibuch
closed
7 months ago
1
Try out multiview-stitcher with WellAcquistion
#105
tibuch
closed
7 months ago
1
[pre-commit.ci] pre-commit autoupdate
#104
pre-commit-ci[bot]
closed
7 months ago
1
ZAdjustedStackAcq: don't fail on unrelated files
#103
imagejan
closed
8 months ago
3
Fix shape mismatch and compute binary mask indicating acquired data
#102
tibuch
closed
8 months ago
1
Write spatial axes unit to zarr
#101
imagejan
closed
8 months ago
1
z adjustment: be more tolerant with missing z positions
#100
imagejan
closed
7 months ago
1
MoBIE shows scalebar in pixels instead of provided unit
#99
tibuch
closed
8 months ago
0
Migrate `write_zarr` to here.
#98
imagejan
closed
3 weeks ago
1
Fix tests on Windows
#97
imagejan
closed
8 months ago
1
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