-
-
Right now whatever is returned from `main()` is used for exit code only.
TODO: Provide a mechanism to indicate that the returned value is to be printed.
Also think how to allow for example `-j` …
-
**Background**
At the moment, Cloud Pipeline allows creating users one-by-one via the GUI. If a number of users shall be created - it would be nice to have a batch creation option.
**Approach**
*…
-
Hi,
I'm running STAR-Fusion v1.8.1 via Singularity with the command:
******************************
singularity exec ~/star-fusion.v1.8.1.simg \
/usr/local/src/STAR-Fusion/STAR-Fusion \
…
-
I noticed another problem after the Covid19DataPortal update. We get the lineage information from the portal directly and store it in the database. After the Data Portal update I looked at the lineage…
-
Found a minor issue with symlink
if running symlink on a groupby step, Name of datasource is repeated for each job in group.
e.g.
```
/lustre/scratch110/sanger/rg12/Pipeline$ plite symlink -f Mark …
-
Hello,
I get the following error when try to download the diamond database using this command `checkm2 database --download --path /path_to_checkm2/checkm2/`
Traceback (most recent call last):
…
-
Hi @brentp,
I've come across a weird issue.
I've updated one of our bcbio installations, resulting in an environment with the latest vcf2db + cyvcf2=0.30.14.
When I try to query one of the db's g…
-
```
What steps will reproduce the problem?
1. install python 2.7 in debian squeeze via pythonbrewer
install RSeQC v 2.3.1-2.3.4 in custom location
2. run bam_stat.py on a bam file from ion torrent…
-
How does AGAThA perform for the alignment of short reads? Meaning 250 - 500 bps, rather than the Kbp's range.