-
### Is there an existing subworkflow for this?
- [X] I have searched for the existing subworkflow
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issu…
-
**Is your feature request related to a problem? Please describe.**
We need to create a minimal cancer variant calling pipeline use case setup here
- https://github.com/bihealth/snappy-use-case-can…
-
Objective: simulate the science use case that we call “MICADO-SCAO-GaiaRef”. It assesses the achievable accuracy in absolute astrometry for science objects observed with MICADO at the ELT in SCAO mode…
-
**Background**
At the moment, Cloud Pipeline allows creating users one-by-one via the GUI. If a number of users shall be created - it would be nice to have a batch creation option.
**Approach**
*…
-
Hi,
I am using this pipeline to reanalyze some data from Illumina Novaseq PE250bp.
And I have noticed that in this paper , they sequenced at Hiseq PE250bp (McNichol, J., Berube, P., Biller, S.…
-
This issue is to explore the overview of Bioinformatics
-
# 課題意識
- free-nagasaki-3dtiles の反省は、三次元タイルのデータが重すぎることである。
- 具体的には、点のデータが稠密すぎる。
# 解決案
- PDAL の `filters.sample` を使ってサンプルする。
# まずやるべきこと
- 実際にサンプルしてみてどのくらいデータが変化をするか理解する。
-
**Command**:
`sudo java -jar cromwell-84.jar run ngs-ubuntu-20-04/iletisim/warp/pipelines/broad/dna_seq/germline/single_sample/exome/local_newGCP_ExomeGermlineSingleSample_deneme6_bcftools.wdl -i ngs…
-
Hi, I am trying the method to extract phylogenetic markers from NGS data, but an Error occurred from my data or your test dataset, could you share your help? Thank you very much.
Below is the output…
-
Hi @brentp,
I've come across a weird issue.
I've updated one of our bcbio installations, resulting in an environment with the latest vcf2db + cyvcf2=0.30.14.
When I try to query one of the db's g…