a2iEditing RNAEditingIndexer issues

a2iEditing / RNAEditingIndexer

A tool for the calculation of RNA-editing index for RNA seq data

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issues

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general_functions WARNING

#44 twinscorn opened 7 months ago
0
Error in Step1, samtools failed to read header from "-"

#43 Lihai-Gong opened 7 months ago
0
fixed fai as user bug

#42 itamary1 opened 10 months ago
0
How to download ref data

#41 szbssg opened 11 months ago
0
Missing G2N and T2N editing indices in test run

#40 SammiLyu opened 1 year ago
0
high C2A and C2TEditingIndex

#39 yulicarp opened 1 year ago
2
"split" parameter in FullConfigStranded.ini

#38 nilaygun opened 1 year ago
0
Clarification on error messages

#37 hengjwj closed 2 years ago
1
About source code of AEI

#36 yangdingyangding opened 2 years ago
2
A problem

#35 ryrl9703 opened 2 years ago
1
Cannot run test data

#34 ryrl9703 opened 2 years ago
1
Installing on Linux error

#33 ryrl9703 opened 2 years ago
0
Strand Deciding Method Options?

#32 sgomez0328 opened 2 years ago
0
AssertionError: Strand Calling In Stranded Library is Ambiguous! Skipping This Sample

#31 sgomez0328 opened 2 years ago
4
mutation site regions according to refseq, how RNAEditingIndexer deals with isoforms?

#30 Juke34 opened 3 years ago
0
No Samples Were Found To Run On

#29 panos-ver opened 3 years ago
0
My column Sample is empty the csv result

#28 Juke34 opened 3 years ago
0
Confused about the MAPQ filtering

#27 YiweiNiu opened 3 years ago
0
Test Data: Number of records read = 0

#26 omansn opened 3 years ago
0
RNAEditingIndexer deletes BAMs if run in the same folder

#25 EMossotto opened 3 years ago
0
RNAEditing deletes BAMs if executed in the same folder

#24 EMossotto closed 3 years ago
0
Bump junit from 4.12 to 4.13.1 in /obj/org/META-INF/maven/commons-cli/commons-cli

#23 dependabot[bot] opened 3 years ago
0
Does gene expression file matter if my RNA-seq is stranded?

#22 ChengyangWang opened 3 years ago
1
bedtoolspath error

#21 Juliaae opened 3 years ago
2
No files found to run

#20 drupani opened 4 years ago
4
Empty output and summary directories after a successful run

#19 ndoshi2921 opened 4 years ago
1
ValueError

#18 jalalsiddiqui opened 4 years ago
4
permission error - used docker run

#17 soundharramsay opened 4 years ago
3
SAMTools Version Test has been Failed

#16 nammideepthi opened 4 years ago
1
Trouble running test data

#15 jalalsiddiqui opened 4 years ago
5
Trouble with installation configure.sh

#14 Salvobioinfo opened 4 years ago
1
docker run No Samples Were Found To Run On! Exiting...

#13 wanhui5867 opened 4 years ago
6
Test Error: Unable to open file *.bam. Exiting

#12 wanhui5867 opened 4 years ago
7
make : No such file or directory

#11 AMChalkie closed 4 years ago
3
utf encoding

#10 AMChalkie opened 4 years ago
1
Docker permissions GenerateIndex

#9 AMChalkie closed 4 years ago
2
Test data is failing on current Docker image

#8 mjsteinbaugh closed 4 years ago
7
User flag doesn't seem to work

#7 trenta closed 4 years ago
3
fixed typos

#6 bounlu closed 4 years ago
0
docker run

#5 cottrellka opened 4 years ago
6
docker creation

#4 AMChalkie opened 4 years ago
1
Trouble with installation - make

#3 cottrellka opened 4 years ago
12
errors during test run

#2 weihongqi closed 5 years ago
2
Create LICENSE

#1 shalomhillelroth closed 5 years ago
0