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TRON-Bioinformatics
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covigator
CoVigator - Monitoring SARS-CoV-2 mutations
MIT License
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Bump requests from 2.31.0 to 2.32.0
#152
dependabot[bot]
opened
1 month ago
0
Bump jinja2 from 3.1.3 to 3.1.4 in /docs
#151
dependabot[bot]
opened
2 months ago
0
Bump werkzeug from 2.3.8 to 3.0.3
#150
dependabot[bot]
opened
2 months ago
0
Bump dash from 2.14.1 to 2.15.0
#149
dependabot[bot]
closed
3 months ago
2
Bump jinja2 from 3.0.1 to 3.1.3 in /docs
#148
dependabot[bot]
closed
5 months ago
1
Added small SQL script to insert current news into dashboard
#147
johausmann
closed
5 months ago
1
Merge 2023 improvements into main for new release
#146
johausmann
closed
6 months ago
0
Update dependencies
#145
johausmann
closed
7 months ago
1
Add exclusion criteria for ENA samples without collection date
#144
johausmann
closed
5 months ago
2
Add feature table and update dependencies to newer versions
#143
johausmann
closed
8 months ago
1
Update dash
#142
johausmann
closed
7 months ago
0
Dashboard performance
#141
johausmann
opened
8 months ago
1
update RTFD recipe
#140
priesgo
closed
8 months ago
1
134 add news section
#139
johausmann
closed
8 months ago
2
Redesign intrahost tab
#138
priesgo
opened
8 months ago
0
Integrate intrahost model into precomputations
#137
priesgo
opened
8 months ago
1
Regenerate sklearn model
#136
priesgo
closed
5 months ago
0
remove titles
#135
priesgo
closed
8 months ago
2
News section
#134
johausmann
closed
8 months ago
0
Covid19Data Portal missing Lineages handling
#133
johausmann
opened
10 months ago
1
v2.2.2 release
#132
johausmann
closed
10 months ago
0
104 update ena accessor nanopore
#131
johausmann
closed
5 months ago
1
Host_tax_id field is NA for all queried ENA runs
#130
johausmann
closed
5 months ago
2
Dashboard improvements
#129
johausmann
closed
10 months ago
1
ENA api update
#128
johausmann
closed
10 months ago
1
Update release pipeline to checkout submodules
#127
johausmann
closed
12 months ago
3
Update release.yml
#126
johausmann
closed
12 months ago
1
123_cite_constellation
#125
johausmann
closed
1 year ago
1
Default time range to one year since last update (lineages and recurrent mutations tab)
#124
priesgo
closed
1 year ago
0
Cite pangolin lineages in docs
#123
priesgo
closed
1 year ago
0
Release v2.2.0
#122
priesgo
closed
1 year ago
1
Can we make the need to click apply more explicit
#121
priesgo
closed
10 months ago
3
Plot label and figure description are too close in the C19 Data Portal overview tab
#120
priesgo
closed
8 months ago
1
Make grey boxes on tabs clickable to highlight associated plot
#119
priesgo
closed
5 months ago
2
Edit the first paragraph in the landing page
#118
priesgo
closed
10 months ago
1
107 remove effect column recurrent mutation table
#117
johausmann
closed
1 year ago
1
Updated lineage constellation submodule to include recent XBB lineages
#116
johausmann
closed
1 year ago
0
Update docs2
#115
priesgo
closed
1 year ago
1
Add option in accessor to disable exclusion criteria based on host_tax_id (as this is not always reported, eg: EBOV...)
#114
priesgo
closed
10 months ago
1
Add option in accessor to disable exclusion criteria based on minimum date
#113
priesgo
closed
10 months ago
1
ENA API update
#112
johausmann
closed
10 months ago
2
Update documentation
#111
johausmann
closed
1 year ago
1
Add reference to the preprint in CoVigator dashboard acknowledgements and in the documentation
#110
priesgo
closed
1 year ago
1
Update main system diagram in the documentation
#109
priesgo
closed
1 year ago
0
The label "monthly frequencies" in the recurrent mutations table is incomplete (when choosing to show frequencies)
#108
priesgo
closed
8 months ago
1
Remove "effect" column from recurrent mutations table
#107
priesgo
closed
1 year ago
0
Update constellation submodule (XBB lineages)
#106
johausmann
closed
1 year ago
0
62 annotate lineages with described mutations
#105
johausmann
closed
1 year ago
3
Update ENA accessor to include Nanopore data
#104
johausmann
closed
5 months ago
4
102 lineage metadata in dashboard
#103
johausmann
closed
1 year ago
1
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