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I'm querying my .gff files to pull out sequences for certain genes but it is giving me output in amino acids. I saw in a supplementary document that you can get this outputted in nucleotides but the d…
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### Prerequisites
- [x] make sure you're are using the latest version by `seqkit version`
- [x] read the [usage](http://bioinf.shenwei.me/seqkit/usage/)
### Describe your issue
* [x] describ…
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**Steps to Reproduce**
1. Switch to Macro
2. Load from file: [System displays nucleotide as @ symbol.zip](https://github.com/epam/ketcher/files/14851940/System.displays.nucleotide.as.%40.symbol.zi…
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Hi
Thank for this great software.
not a bug but a question/enhancement request:
Is there a way to also output the coding sequence for each final BUSCO gene? This would be really useful in certa…
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## Expected Behavior
easy-search should finish execution without errors
## Current Behavior
Error during pre-filter step
> Index table k-mer threshold: 0 at k-mer size 15
> Index table: …
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Hello,I have try tDRnamer,a great software to help name tDR.
I have run tDRnamer on webserver and local version(V1.2.1 & V.1.30), I have found some tDRname report different name.
Such as "UUGACCCG…
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We are trying to test our local installation of checkm2 by reproducing Completeness data for assemblies listed in Supplementary Table 6 from the preprint: https://www.biorxiv.org/content/10.1101/2022.…
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Hi，
I have tested other methods like vadr and virulign to annotate viral contigs, But they failed to annotate viral contigs that have low nucleotide consistency with reference sequences. So, Can gb2s…
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Hi, Thank you for this awesome pipeline for pseudogenes analysis. I just wanted to know if I can get the fasta sequences categorized as Short, long, fragmented and intergenic sequences. Because, I thi…
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If we plan to support protein sequences, we need to improve components semantic, e.g. the `Nucleotide` component.