huangnengCSU compleasm issues

huangnengCSU / compleasm

A genome completeness evaluation tool based on miniprot

Apache License 2.0

172 stars 16 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

run compleasm as array job

#39 Overcraft90 opened 3 days ago
2
For the evaluation of a very large genome, there is a significant difference between Compleasm and BUSCO

#38 GLking123 opened 1 month ago
0
[Feature Request] Provide support for PyHMMER

#37 jolespin opened 1 month ago
0
Fix pandas FutureWarning

#36 twrightsman opened 3 months ago
0
arthropoda_odb10 same BUSCOs for multiple assemblies

#35 katiecdillon opened 4 months ago
4
compleasm protein mode finding multiple BUSCOs in same mRNA

#34 jbh-cas opened 4 months ago
0
Different duplicated genes of compleasm and BUSCO

#33 shehongbing opened 4 months ago
0
Add ability to set library path via COMPLEASM_LIBRARY_PATH if --library_path unspecified

#32 douglasgscofield opened 5 months ago
1
Create compleasm.yml

#31 ghost closed 4 months ago
0
socket.gaierror: [Errno -2] Name or service not known

#30 yeeus closed 5 months ago
5
how to evaluate more than one genome assembly

#29 Jerry-is-a-mouse closed 5 months ago
4
zero frameshifts report when using miniprot > 0.10

#28 huangnengCSU closed 6 months ago
0
What's the difference between compleasm run and busco --miniprot?

#27 juanjo255 closed 5 months ago
1
Can't read the genome sequence

#26 zhidaobuzhidao closed 5 months ago
2
compleasm download error

#25 ChuanzhengWei closed 6 months ago
1
Feature request: BUSCO-formatted output

#24 schorlton opened 6 months ago
1
md5 hash is incorrect: 8f6c62320cd30f8017af530cbb099536 while 8f6c62320cd30f8017af530cbb099536 file_versions.tsv expected

#23 dukecomeback closed 7 months ago
2
version info

#22 jbh-cas closed 7 months ago
2
mammalian database

#21 sanjin725 opened 7 months ago
3
Error - download submodule

#20 rlibouba closed 5 months ago
5
compleasm output also cds nucleotide sequences for the final set of genes

#19 estolle opened 8 months ago
3
Different stats for protein mode

#18 arslan9732 opened 8 months ago
2
compress hmmer output

#17 dirkjanvw opened 8 months ago
1
Python regex syntax warning

#16 aflaus opened 8 months ago
0
compleasm after annotation

#15 ardy20 closed 7 months ago
1
Error miniprot

#14 rlibouba closed 8 months ago
3
Input translated protein sequences?

#13 charlesfoster closed 9 months ago
2
KeyError: 'Target_Species'

#12 larsmoret opened 10 months ago
10
Documentation of summary output

#11 pgonzale60 closed 10 months ago
2
Exception: miniprot exited with non-zero exit code: -9

#10 cbortoluzzi closed 12 months ago
10
"I" value

#9 theo-allnutt-bioinformatics closed 11 months ago
3
Please, make Compleasm being able to use the second URL of BUSCO data

#8 shelkmike opened 1 year ago
2
KeyError: 'Target_species'

#7 N0s3n closed 1 year ago
4
Does compleasm try to download something when run specifying lineage?

#6 olekto opened 1 year ago
10
Summary file output

#5 aabaricalla opened 1 year ago
2
whether compleasm can be used for the evaluation of cds or pep?

#4 zhangwenda0518 closed 1 year ago
1
Error in lineage

#3 mohamadi closed 1 year ago
1
an error in busco mode

#2 wq-ls closed 1 year ago
6
Updated the Getting Started section

#1 lh3 closed 1 year ago
1