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`chrX 125899652 Minda_155 N . PASS SVLEN=63;SVTYPE=INS;SUPP_VEC=ONT_severus_INS22084,ONT_Sniffles2.INS.313M16,ONT_i_414,ONT_ID_50518_1,PB_severus_INS19445,PB_Sniffles2.INS.2F0M16,PB_i_950,PB_ID_51051…
jzook updated
1 month ago
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L'objectif : Ils nous on transmit un premier fichier avec des données exemples
On souhaite valider que leur fichier correspond au SDS (Schema données standart)
Si ce n'est pas le cas ont leur fait un…
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`chr19 38981212 Minda_66 N . PASS SVLEN=2311;SVTYPE=INV;SUPP_VEC=PB_severus_INV3303,ONT_severus_INV3732,PB_ID_62680_2,ONT_ID_51603_2,PB_Sniffles2.INV.207M12,ONT_Sniffles2.INV.216M12,ILL_MantaBND:2474…
jzook updated
1 month ago
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Hi all,
I am assembling a genome for a bird (estimated genome size 1.15 Gbp). I already have a VGP-quality assembly I generated combining HiFi and HiC (assembly and phasing with Hifiasm, scaffoldin…
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`chr19 44991106 Minda_70 N N]chr19:44992622] . PASS SVLEN=1516;SVTYPE=BND;SUPP_VEC=ILL_MantaBND:247923:0:1:0:0:0:0,ILL_gridss270ff_877h,PB_r_201_1,ONT_r_123_1,PB_severus_INV3322,ONT_severus_INV3758,ON…
jzook updated
1 month ago
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`chr18 28482565 Minda_61 N N[chrX:95810802[ . PASS SVLEN=-1;SVTYPE=BND;SUPP_VEC=PB_severus_BND2977_2,PB_ID_40651_2,PB_r_193_1,ONT_r_115_1,PB_Sniffles2.BND.27CM16,ONT_severus_BND3370_2,ONT_ID_69817_2,O…
jzook updated
1 month ago
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Could i use gfase for gfa of Flye (HERRO corrected ul-ONT reads)?
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`chr22 44252043 Minda_92 N . PASS SVLEN=166299;SVTYPE=DUP;SUPP_VEC=PB_severus_DUP4482,PB_ID_55301_2,PB_r_249,ONT_severus_BND5202_2,ONT_r_157,ILL_MantaDUP:TANDEM:260750:0:1:0:0:0,ONT_ID_65406_2,ILL_22…
jzook updated
1 month ago
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`chr10 60797723 Minda_10 N . PASS SVLEN=106610;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:169550:0:1:0:0:0,ILL_gridss173bf_7556h,PB_severus_DUP771,PB_ID_18111_2,ILL_3808744609:2,PB_r_44,ONT_r_29,ONT_sev…
jzook updated
1 month ago
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`chr15 98348348 Minda_47 N . PASS SVLEN=460879;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:223247:0:1:0:0:0,ILL_gridss240bf_60h,ONT_severus_DUP2603,PB_ID_20435_2,PB_r_130,ONT_ID_72365_2,ONT_r_96,PB_Sniff…
jzook updated
1 month ago